VSI137
Library VS
(Link to library)
Clone ID VSI137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSI137P
(Link to Original site)
Representative DNA sequence
>VSI137 (VSI137Q) /CSM/VS/VSI1-B/VSI137Q.Seq.d/
CTTACATGCAAAGACTTTTTTTCTTTTTCTATTTTTTATCCAATCACTTTAAAAAAAAAA
XXXXXXXXXXCTTACATGCAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
LTCKDFFSFSIFYPITLKKK---

---LTCK


Translated Amino Acid sequence (All Frames)
Frame A:
LTCKDFFSFSIFYPITLKKK---

---LTCK

Frame B:
lhaktfflflffiqsl*kk---

---lha

Frame C:
ymqrlffffyflsnhfkkk---

---ymq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI137 (VSI137Q) /CSM/VS/VSI1-B/VSI137Q.Seq.d/ 100 5e-21
VSE750 (VSE750Q) /CSM/VS/VSE7-C/VSE750Q.Seq.d/ 76 8e-14
VSE736 (VSE736Q) /CSM/VS/VSE7-B/VSE736Q.Seq.d/ 76 8e-14
VSE691 (VSE691Q) /CSM/VS/VSE6-D/VSE691Q.Seq.d/ 76 8e-14
VSE527 (VSE527Q) /CSM/VS/VSE5-B/VSE527Q.Seq.d/ 76 8e-14
VSB458 (VSB458Q) /CSM/VS/VSB4-C/VSB458Q.Seq.d/ 76 8e-14
SSK510 (SSK510Q) /CSM/SS/SSK5-A/SSK510Q.Seq.d/ 76 8e-14
SSI708 (SSI708Q) /CSM/SS/SSI7-A/SSI708Q.Seq.d/ 76 8e-14
SSG203 (SSG203Q) /CSM/SS/SSG2-A/SSG203Q.Seq.d/ 76 8e-14
SSF337 (SSF337Q) /CSM/SS/SSF3-B/SSF337Q.Seq.d/ 76 8e-14

own update 2001.11.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268211) Dictyostelium discoideum vegetative cDNA clone:VS... 30 6.6 2

dna update 2009. 7. 3
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 68,959,983
protein update 2009. 3.24
PSORT

psg: 0.95 gvh: 0.29 alm: 0.45 top: 0.73 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: mitochondrial
20.0 %: cytoplasmic

>> prediction for VSI137 is nuc

5' end seq. ID VSI137F
5' end seq.
>VSI137F.Seq
CTTACATGCAAAGACTTTTTTTCTTTTTCTATTTTTTATCCAATCACTTTAAAAAAAAAA
----------
Length of 5' end seq. 60
3' end seq. ID VSI137Z
3' end seq.
>VSI137Z.Seq
----------CTTACATGCAAA
Length of 3' end seq. 12
Connected seq. ID VSI137P
Connected seq.
>VSI137P.Seq
CTTACATGCAAAGACTTTTTTTCTTTTTCTATTTTTTATCCAATCACTTTAAAAAAAAAA
----------CTTACATGCAAA
Length of connected seq. 72
Full length Seq ID -
Full length Seq. -
Length of full length seq. -