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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI126
Library VS
(Link to library)
Clone ID VSI126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID VSI126P
(Link to Original site)
Representative DNA sequence 
>VSI126 (VSI126Q) /CSM/VS/VSI1-B/VSI126Q.Seq.d/
ATATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGGTTTCCA
AAAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGA
ATTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAATCTGGTCAATTCATCATTAT
GGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAA
TTAAATTAAATAGTTAAAAATAAATATTTTATAAAGATTAAAAAAAAAAXXXXXXXXXXA
TATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAANAGGTTTCCAA
AAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGAA
TTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAATCTGGTCAATTCATCATTATG
GTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAAT
TAAATTAAATAGTTAAAAATAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
isl*slgssysrs*nvkrfpks*syas*istnlfypqcl*illywcr**nyfriwsihhy
gw*stirfiftikkkikkikln*IVKNKYFIKIKKK---

---YLSDLWAQVTPEVKMLXGFQKVDLMPAKSQQISFTLNAYEFSFIGVDNKITLESGQF
IIMVGNQQLGLYLQ*kkklkkln*ik*lki
Translated Amino Acid sequence (All Frames) 
Frame A:
isl*slgssysrs*nvkrfpks*syas*istnlfypqcl*illywcr**nyfriwsihhy
gw*stirfiftikkkikkikln*IVKNKYFIKIKKK---

---isl*slgssysrs*nvxrfpks*syas*istnlfypqcl*illywcr**nyfriwsi
hhygw*stirfiftikkkikkikln*ivknk

Frame B:
ylsdlwaqvtpevkmlrgfqkvdlmpaksqqisftlnayefsfigvdnkitlesgqfiim
vgnqqlglylq*kkklkkln*ik*lkinil*rlkkk---

---YLSDLWAQVTPEVKMLXGFQKVDLMPAKSQQISFTLNAYEFSFIGVDNKITLESGQF
IIMVGNQQLGLYLQ*kkklkkln*ik*lki

Frame C:
islifglkllqklkc*evskklilcqlnlnksllpsmpmnspllvsiikll*nlvnsslw
lvinn*vyiynkkkn*kn*iklns*k*ifykd*kk---

---islifglkllqklkc*xvskklilcqlnlnksllpsmpmnspllvsiikll*nlvns
slwlvinn*vyiynkkkn*kn*iklns*k*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI126 (VSI126Q) /CSM/VS/VSI1-B/VSI126Q.Seq.d/                        426   e-118
SLF774 (SLF774Q) /CSM/SL/SLF7-D/SLF774Q.Seq.d/                        426   e-118
VHJ645 (VHJ645Q) /CSM/VH/VHJ6-B/VHJ645Q.Seq.d/                        420   e-117
VHO350 (VHO350Q) /CSM/VH/VHO3-C/VHO350Q.Seq.d/                        418   e-116
VHJ486 (VHJ486Q) /CSM/VH/VHJ4-D/VHJ486Q.Seq.d/                        408   e-113
CFJ426 (CFJ426Q) /CSM/CF/CFJ4-B/CFJ426Q.Seq.d/                        404   e-112
VHJ687 (VHJ687Q) /CSM/VH/VHJ6-D/VHJ687Q.Seq.d/                        402   e-111
VHH353 (VHH353Q) /CSM/VH/VHH3-C/VHH353Q.Seq.d/                        402   e-111
VHD430 (VHD430Q) /CSM/VH/VHD4-B/VHD430Q.Seq.d/                        402   e-111
VHH381 (VHH381Q) /CSM/VH/VHH3-D/VHH381Q.Seq.d/                        400   e-111
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268191) Dictyostelium discoideum vegetative cDNA clone:VS...   424   e-114  1
(AU053131) Dictyostelium discoideum slug cDNA, clone SLF774.      424   e-114  1
(AU268192) Dictyostelium discoideum vegetative cDNA clone:VS...   418   e-113  1
(BJ442592) Dictyostelium discoideum cDNA clone:ddv50i12, 3' ...   418   e-113  1
(L21014) Dictyostelium discoideum beta-glucosidase mRNA, com...   416   e-112  1
(BJ445456) Dictyostelium discoideum cDNA clone:ddv59d13, 3' ...   416   e-112  1
(BJ442448) Dictyostelium discoideum cDNA clone:ddv49l22, 3' ...   406   e-109  1
(BJ375597) Dictyostelium discoideum cDNA clone:ddc19d08, 3' ...   402   e-108  1
(BJ442771) Dictyostelium discoideum cDNA clone:ddv50m22, 3' ...   400   e-107  1
(BJ441082) Dictyostelium discoideum cDNA clone:ddv45j13, 3' ...   400   e-107  1
dna update 2009. 7. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma...   129   5e-29
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    60   3e-08
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    55   9e-07
AE016830_1150(AE016830|pid:none) Enterococcus faecalis V583, com...    52   1e-05
CP001032_813(CP001032|pid:none) Opitutus terrae PB90-1, complete...    52   1e-05
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    52   1e-05
CP000140_2979(CP000140|pid:none) Parabacteroides distasonis ATCC...    51   2e-05
CP000964_1565(CP000964|pid:none) Klebsiella pneumoniae 342, comp...    51   2e-05
CP000647_2525(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    50   4e-05
CR626927_331(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ...    50   5e-05
protein update 2009. 3.24
PSORT 

 psg: 0.55  gvh: 0.38  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSI126 is cyt
5' end seq. ID VSI126F
5' end seq. 
>VSI126F.Seq
ATATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGGTTTCCA
AAAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGA
ATTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAATCTGGTCAATTCATCATTAT
GGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAA
TTAAATTAAATAGTTAAAAATAAATATTTTATAAAGATTAAAAAAAAAA----------
Length of 5' end seq. 289
3' end seq. ID VSI126Z
3' end seq. 
>VSI126Z.Seq
----------ATATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAA
NAGGTTTCCAAAAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCA
ATGCCTATGAATTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAATCTGGTCAAT
TCATCATTATGGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAATTAA
AAAAATTAAATTAAATTAAATAGTTAAAAATAAA
Length of 3' end seq. 264
Connected seq. ID VSI126P
Connected seq. 
>VSI126P.Seq
ATATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGGTTTCCA
AAAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGA
ATTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAATCTGGTCAATTCATCATTAT
GGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAA
TTAAATTAAATAGTTAAAAATAAATATTTTATAAAGATTAAAAAAAAAA----------A
TATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAANAGGTTTCCAA
AAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGAA
TTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAATCTGGTCAATTCATCATTATG
GTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAAT
TAAATTAAATAGTTAAAAATAAA
Length of connected seq. 553
Full length Seq ID -
Full length Seq. -
Length of full length seq. -