VSI122
Library VS
(Link to library)
Clone ID VSI122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16039-1
Original site URL
Representative seq. ID VSI122P
(Link to Original site)
Representative DNA sequence
>VSI122 (VSI122Q) /CSM/VS/VSI1-A/VSI122Q.Seq.d/
ANTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTAATTGTCACAAAAGCAATAAAA
ATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCCTTGGCTGCTACCAATAACGGT
GCCAATTATGATTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCA
AGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGTGACACCGCTGCTATTTTTTTC
GCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGCCATATTATAT
ACACAAAAACAATATCCCCATATTGATATTAACTATGCAGTTTTAACACCAGTTAATACT
CACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGATGCAGCAGCA
GCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGACAATAATAAATTTATGTAGGT
TCCATCCGAATTTTATTTACTTAATTTCTGNATTATTTATTTATTTTTTTTTTTAAAAAA
AAAAXXXXXXXXXXCAATAAAAATTAGAGATTTAGATCAAATACCNCAAACTGNACTTGC
CTTGGCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCNCCTAATTACATAACAAA
TGCCAGAAAAAGATTTAAAGCAAGACTCAATAGAAACCCAATATGGNACCCAAAAATGGG
TGACNCCGCTGCTATTTTTTTNGCAAGATNTGATCAAGCAGGTTGGGATATCANAGCTNA
AGTTNACGAGGCCATATTATATACNCAAAAACAATATCCCCATATTGATATTAACTATGC
AGTTTTAACACCAGTTAATACTCNCGATTTAGTTGACATGAATCTCATCGCCCAGTTATT
CGCTGAGGATNATGCANCANCANCAGCAGCAGCAAAACCAACCAAANCAACCAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
xyimtmvcivqk*lsqkq*klei*ikyhklylpwllpitvpimitphlit*qmpekdlkq
dsietqygtqkwvtpllffsqdlikqvgiselkltrpyyihknnipililtmqf*hqlil
ti*lt*isspsyslrmmqqqqqqqtnqtnqikdnnkfm*VPSEFYLLNFXIIYLFFFLKK
K---

---IKIRDLDQIPQTXLALAATNNGANYDYASPNYITNARKRFKARLNRNPIWXPKMGDX
AAIFXARXDQAGWDIXAXVXEAILYTQKQYPHIDINYAVLTPVNTXDLVDMNLIAQLFAE
DXAXXXAAAKPTKXTK


Translated Amino Acid sequence (All Frames)
Frame A:
xlyndngvycskvivtkaikirdldqipqtvlalaatnnganydyaspnyitnarkrfka
rlnrnpiwypkmgdtaaiffarsdqagwdiraevdeailytqkqyphidinyavltpvnt
hdlvdmnliaqlfaeddaaaaaaanqpnqpnqgq**iyvgsirilft*flxylfifffkk
k---

---q*klei*ikyxklxlpwllpitvpimitpxlit*qmpekdlkqdsietqygtqkwvt
pllffxqdxikqvgisxlkxtrpyyixknnipililtmqf*hqlilxi*lt*isspsysl
rxmxxxqqqqnqpxqpn

Frame B:
xyimtmvcivqk*lsqkq*klei*ikyhklylpwllpitvpimitphlit*qmpekdlkq
dsietqygtqkwvtpllffsqdlikqvgiselkltrpyyihknnipililtmqf*hqlil
ti*lt*isspsyslrmmqqqqqqqtnqtnqikdnnkfm*VPSEFYLLNFXIIYLFFFLKK
K---

---nkn*rfrsntxnxtclgcyq*rcql*lrlx*lhnkcqkki*sktq*kpnmxpkng*x
rcyffxkx*ssrlgyxsxsxrghiiyxktispy*y*lcsfnts*ysrfs*heshrpvir*
gxcxxxsssktnqxnq

Frame C:
fi**qwcvlfksnchksnkn*rfrsnttnctclgcyq*rcql*lrlt*lhnkcqkki*sk
tq*kpnmvpkng*hrcyffrki*ssrlgyqs*s*rghiiytktispy*y*lcsfnts*ys
rfs*heshrpvir*g*csssssskptkptksrtiinlcrfhpnfiylisxlfiyfff*kk
---

---IKIRDLDQIPQTXLALAATNNGANYDYASPNYITNARKRFKARLNRNPIWXPKMGDX
AAIFXARXDQAGWDIXAXVXEAILYTQKQYPHIDINYAVLTPVNTXDLVDMNLIAQLFAE
DXAXXXAAAKPTKXTK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ868 (VSJ868Q) /CSM/VS/VSJ8-C/VSJ868Q.Seq.d/ 769 0.0
VSJ818 (VSJ818Q) /CSM/VS/VSJ8-A/VSJ818Q.Seq.d/ 769 0.0
VSJ624 (VSJ624Q) /CSM/VS/VSJ6-A/VSJ624Q.Seq.d/ 769 0.0
VSJ236 (VSJ236Q) /CSM/VS/VSJ2-B/VSJ236Q.Seq.d/ 769 0.0
VSI854 (VSI854Q) /CSM/VS/VSI8-C/VSI854Q.Seq.d/ 769 0.0
VSI805 (VSI805Q) /CSM/VS/VSI8-A/VSI805Q.Seq.d/ 769 0.0
VSI619 (VSI619Q) /CSM/VS/VSI6-A/VSI619Q.Seq.d/ 769 0.0
VSI293 (VSI293Q) /CSM/VS/VSI2-D/VSI293Q.Seq.d/ 769 0.0
VSI122 (VSI122Q) /CSM/VS/VSI1-A/VSI122Q.Seq.d/ 769 0.0
VSH612 (VSH612Q) /CSM/VS/VSH6-A/VSH612Q.Seq.d/ 769 0.0

own update 2001.11.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ415797) Dictyostelium discoideum cDNA clone:ddv23d21, 5' ... 456 0.0 3
(C23664) Dictyostelium discoideum gamete cDNA, clone FC-AJ12. 456 0.0 3
(AU269621) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
(AU264356) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
(AU285043) Dictyostelium discoideum gamete cDNA clone:FCL-AB... 456 0.0 3
(AU264358) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
(AU270214) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
(AU268183) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
(AU269341) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
(AU264907) Dictyostelium discoideum vegetative cDNA clone:VS... 456 0.0 3
dna update 2009. 7. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P14330) RecName: Full=Vegetative-specific protein V4; &S35649(... 280 6e-74
X15381_1(X15381|pid:none) Dictyostelium discoideum V4a gene. 170 7e-41

protein update 2009. 3.24
PSORT

psg: 0.75 gvh: 0.40 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal

>> prediction for VSI122 is cyt

5' end seq. ID VSI122F
5' end seq.
>VSI122F.Seq
ANTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTAATTGTCACAAAAGCAATAAAA
ATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCCTTGGCTGCTACCAATAACGGT
GCCAATTATGATTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCA
AGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGTGACACCGCTGCTATTTTTTTC
GCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGCCATATTATAT
ACACAAAAACAATATCCCCATATTGATATTAACTATGCAGTTTTAACACCAGTTAATACT
CACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGATGCAGCAGCA
GCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGACAATAATAAATTTATGTAGGT
TCCATCCGAATTTTATTTACTTAATTTCTGNATTATTTATTTATTTTTTTTTTTAAAAAA
AAAA----------
Length of 5' end seq. 544
3' end seq. ID VSI122Z
3' end seq.
>VSI122Z.Seq
----------CAATAAAAATTAGAGATTTAGATCAAATACCNCAAACTGNACTTGCCTTG
GCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCNCCTAATTACATAACAAATGCC
AGAAAAAGATTTAAAGCAAGACTCAATAGAAACCCAATATGGNACCCAAAAATGGGTGAC
NCCGCTGCTATTTTTTTNGCAAGATNTGATCAAGCAGGTTGGGATATCANAGCTNAAGTT
NACGAGGCCATATTATATACNCAAAAACAATATCCCCATATTGATATTAACTATGCAGTT
TTAACACCAGTTAATACTCNCGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCT
GAGGATNATGCANCANCANCAGCAGCAGCAAAACCAACCAAANCAACCAAAT
Length of 3' end seq. 402
Connected seq. ID VSI122P
Connected seq.
>VSI122P.Seq
ANTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTAATTGTCACAAAAGCAATAAAA
ATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCCTTGGCTGCTACCAATAACGGT
GCCAATTATGATTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCA
AGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGTGACACCGCTGCTATTTTTTTC
GCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGCCATATTATAT
ACACAAAAACAATATCCCCATATTGATATTAACTATGCAGTTTTAACACCAGTTAATACT
CACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGATGCAGCAGCA
GCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGACAATAATAAATTTATGTAGGT
TCCATCCGAATTTTATTTACTTAATTTCTGNATTATTTATTTATTTTTTTTTTTAAAAAA
AAAA----------CAATAAAAATTAGAGATTTAGATCAAATACCNCAAACTGNACTTGC
CTTGGCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCNCCTAATTACATAACAAA
TGCCAGAAAAAGATTTAAAGCAAGACTCAATAGAAACCCAATATGGNACCCAAAAATGGG
TGACNCCGCTGCTATTTTTTTNGCAAGATNTGATCAAGCAGGTTGGGATATCANAGCTNA
AGTTNACGAGGCCATATTATATACNCAAAAACAATATCCCCATATTGATATTAACTATGC
AGTTTTAACACCAGTTAATACTCNCGATTTAGTTGACATGAATCTCATCGCCCAGTTATT
CGCTGAGGATNATGCANCANCANCAGCAGCAGCAAAACCAACCAAANCAACCAAAT
Length of connected seq. 946
Full length Seq ID -
Full length Seq. -
Length of full length seq. -