AHA679
Library AH
(Link to library)
Clone ID AHA679
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16360-1
Original site URL
Representative seq. ID AHA679P
(Link to Original site)
Representative DNA sequence
>AHA679 (AHA679Q) /CSM/AH/AHA6-D/AHA679Q.Seq.d/
ATTTAATTTCAATTAAATTATTTAAACACATACACAAAAAAAAAAATAATATTGATAAAC
GCTTCATCAAAATTATAATTTAATCTATAAAGACCATATTTTATTTATTTATTNAATTTT
TTATTTTCTATTTATTNATTTATTCAAATTTTTTTTTTTNAATTTTAAATAANTAAAAAA
AAAAXXXXXXXXXXGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAA
AAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCA
TTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCAC
TTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTA
CTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAA
AGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAG
TAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAAT
CAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCA
TTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTA
TGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCG
TAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTC
GTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTAT
T
sequence update 2002.10.25
Translated Amino Acid sequence
i*fqlnylntytkkkiilinasskl*fnl*rpyfiylxnflfsiyxfiqifffxf*IXKK
K---

---ASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLW
VEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVV
CEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMM
SAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVL


Translated Amino Acid sequence (All Frames)
Frame A:
i*fqlnylntytkkkiilinasskl*fnl*rpyfiylxnflfsiyxfiqifffxf*IXKK
K---

---ASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLW
VEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVV
CEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMM
SAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVL

Frame B:
fnfn*ii*thtqkkk*y**tlhqnynliykdhilfiyxifyflfixlfkfffxnfk*xkk
k---

---llh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg
*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*f
vkfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**
vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfy

Frame C:
lisiklfkhihkkknnidkrfikiii*siktifylfixffifylxiysnfffxilnx*kk
---

---fsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlg
rsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl
*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyde
cct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/ 1402 0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/ 1402 0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/ 1402 0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/ 1402 0.0
SHD789 (SHD789Q) /CSM/SH/SHD7-D/SHD789Q.Seq.d/ 1402 0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/ 1402 0.0
SHC648 (SHC648Q) /CSM/SH/SHC6-B/SHC648Q.Seq.d/ 1402 0.0
SHC269 (SHC269Q) /CSM/SH/SHC2-C/SHC269Q.Seq.d/ 1402 0.0
SHC267 (SHC267Q) /CSM/SH/SHC2-C/SHC267Q.Seq.d/ 1402 0.0
SHC163 (SHC163Q) /CSM/SH/SHC1-C/SHC163Q.Seq.d/ 1402 0.0

own update 2004. 4.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 1402 0.0 1
BM608903|BM608903.1 17000687086872 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449690492 5', mRNA sequence. 40 3e-04 2
AC009815|AC009815.2 Homo sapiens clone 115_L_24, LOW-PASS SEQUENCE SAMPLING. 34 0.090 4
AL035610|AL035610.3 Homo sapiens chromosome 21 PAC LLNLP704M17648Q13. 32 0.18 9
BM598351|BM598351.1 17000687619693 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449727612 5', mRNA sequence. 48 0.22 1
BM586494|BM586494.1 17000687314976 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449681047 5', mRNA sequence. 48 0.22 1
BS000224|BS000224.1 Pan troglodytes chromosome 22 clone:PTB-030G10, map 22, complete sequences. 32 0.53 9
BX617788|BX617788.1 Anopheles gambiae EST, clone AGADX22TR. 40 0.54 2
AJ235271|AJ235271.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4. 32 0.60 11
AF452048|AF452048.1 Pyrocoelia rufa mitochondrion, complete genome. 36 0.61 5
dna update 2004. 2.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 478 e-133
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl... 40 0.10
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/... 35 2.5
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 2.5
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 35 4.2

protein update 2009. 4.27
PSORT

psg: 0.95 gvh: 0.48 alm: 0.23 top: 0.73 tms: 0.20 mit: 0.33 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: endoplasmic reticulum
24.0 %: plasma membrane
12.0 %: nuclear
12.0 %: vacuolar
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for AHA679 is end

5' end seq. ID AHA679F
5' end seq.
>AHA679F.Seq
ATTTAATTTCAATTAAATTATTTAAACACATACACAAAAAAAAAAATAATATTGATAAAC
GCTTCATCAAAATTATAATTTAATCTATAAAGACCATATTTTATTTATTTATTNAATTTT
TTATTTTCTATTTATTNATTTATTCAAATTTTTTTTTTTNAATTTTAAATAANTAAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 194
3' end seq. ID AHA679Z
3' end seq.
>AHA679Z.Seq
NNNNNNNNNNGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGA
TCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCA
ATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTG
GGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTA
TATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGAT
TAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGT
TTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAG
TGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAA
AAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGAT
GAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGC
TGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCA
AAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATT
Length of 3' end seq. 717
Connected seq. ID AHA679P
Connected seq.
>AHA679P.Seq
ATTTAATTTCAATTAAATTATTTAAACACATACACAAAAAAAAAAATAATATTGATAAAC
GCTTCATCAAAATTATAATTTAATCTATAAAGACCATATTTTATTTATTTATTNAATTTT
TTATTTTCTATTTATTNATTTATTCAAATTTTTTTTTTTNAATTTTAAATAANTAAAAAA
AAAA----------GCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAA
AAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCA
TTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCAC
TTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTA
CTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAA
AGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAG
TAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAAT
CAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCA
TTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTA
TGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCG
TAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTC
GTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTAT
T
Length of connected seq. 891
Full length Seq ID -
Full length Seq. -
Length of full length seq. -