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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI115
Library VS
(Link to library)
Clone ID VSI115
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15178-1
Original site URL
Representative seq. ID VSI115P
(Link to Original site)
Representative DNA sequence 
>VSI115 (VSI115Q) /CSM/VS/VSI1-A/VSI115Q.Seq.d/
AGTTCAAGTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAAT
GCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTT
TCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGT
ATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCA
ATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTT
AACACTGTCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTT
GCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACC
GGAGGGTAAATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATA
GTTTATTCTATTATTGTNAAAAAGAAAAAAAAAAXXXXXXXXXXATCNAATTATAGTAAA
ATGACAGGAAAAAGTTGTAGTTAAAACCACTAATGCACCAGGTGCTATTGGCCCATACAG
TCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGTTTAGGTATTGATAAAGA
TACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACTAAACTTGCTTTAACAAA
CATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAAGTTGTTAAAACTACCAT
CTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTCTATTCTACTTTCTTCCC
AGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCAAAGAATGCTTTAGT
AGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCAAATAATATCATCAA
TTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATACTATTATGAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
fkyikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*y
sn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlccc
lftkecfsrn*sycnspmnrrvnqiissiqnyk**IISNSLFYYCXKEKK---

---SNYSKMTGKSCS*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*y
sn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlccc
lftkecfsrn*sycnspmnrg*ik*yhqfkiinnk**vivytimk
Translated Amino Acid sequence (All Frames) 
Frame A:
sssisnyskmtgkvvvkttnapgaigpysqaiiannqvfvsgclgidkdtmqftsetdvs
iqtklaltnmkniveaagssmekvvkttillksmddfqavntvystffpvdpparstfav
aclpknalveieaiaihq*tgg*ik*yhqfkiinnk**vivysiivkkkkk---

---ixl**ndrkkl*lkplmhqvllahtvkqllltikfsflvv*vlikilcnshlklmlv
fklnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillssqlthqldqplll
lvyqrml**klkllqftneprvnqiissiqnyk**iisnslyyyek

Frame B:
vqvyqiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikilcnshlklmlv
fklnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillssqlthqldqplll
lvyqrml**klkllqftnepegksnniinskl*iinnk**filllxkrkkk---

---SNYSKMTGKSCS*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*y
sn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlccc
lftkecfsrn*sycnspmnrg*ik*yhqfkiinnk**vivytimk

Frame C:
fkyikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*y
sn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlccc
lftkecfsrn*sycnspmnrrvnqiissiqnyk**IISNSLFYYCXKEKK---

---xiivk*qekvvvkttnapgaigpysqaiiannqvfvsgclgidkdtmqftsetdvsi
qtklaltnmkniveaagssmekvvkttillksmddfqavntvystffpvdpparstfava
clpknalveieaiaihq*tegksnniinskl*iinnk**fill*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI115 (VSI115Q) /CSM/VS/VSI1-A/VSI115Q.Seq.d/                        842   0.0
VFN414 (VFN414Q) /CSM/VF/VFN4-A/VFN414Q.Seq.d/                        835   0.0
AFM381 (AFM381Q) /CSM/AF/AFM3-D/AFM381Q.Seq.d/                        821   0.0
SSC695 (SSC695Q) /CSM/SS/SSC6-D/SSC695Q.Seq.d/                        807   0.0
SHA718 (SHA718Q) /CSM/SH/SHA7-A/SHA718Q.Seq.d/                        807   0.0
FC-BE13 (FC-BE13Q) /CSM/FC/FC-BE/FC-BE13Q.Seq.d/                      791   0.0
VSF418 (VSF418Q) /CSM/VS/VSF4-A/VSF418Q.Seq.d/                        787   0.0
VSH656 (VSH656Q) /CSM/VS/VSH6-C/VSH656Q.Seq.d/                        722   0.0
VSD732 (VSD732Q) /CSM/VS/VSD7-B/VSD732Q.Seq.d/                        632   e-180
VFK213 (VFK213Q) /CSM/VF/VFK2-A/VFK213Q.Seq.d/                         38   0.26
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268170) Dictyostelium discoideum vegetative cDNA clone:VS...   844   0.0    2
(BJ416746) Dictyostelium discoideum cDNA clone:ddv27l04, 5' ...   835   0.0    2
(AU268171) Dictyostelium discoideum vegetative cDNA clone:VS...   817   0.0    2
(BJ346982) Dictyostelium discoideum cDNA clone:dda25b21, 3' ...   821   0.0    2
(BJ329638) Dictyostelium discoideum cDNA clone:dda25b21, 5' ...   821   0.0    2
(AU264482) Dictyostelium discoideum vegetative cDNA clone:VS...   632   0.0    3
(AU264481) Dictyostelium discoideum vegetative cDNA clone:VS...   632   0.0    3
(BJ391747) Dictyostelium discoideum cDNA clone:dds25d05, 5' ...   807   0.0    2
(AU265204) Dictyostelium discoideum vegetative cDNA clone:VS...   787   0.0    2
(AU284600) Dictyostelium discoideum gamete cDNA clone:FC-BE1...   791   0.0    1
dna update 2009. 7. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001072_955(CP001072|pid:none) Helicobacter pylori Shi470, comp...   132   1e-29
AP008230_1335(AP008230|pid:none) Desulfitobacterium hafniense Y5...   132   2e-29
AK061373_1(AK061373|pid:none) Oryza sativa Japonica Group cDNA c...   131   3e-29
CP000241_928(CP000241|pid:none) Helicobacter pylori HPAG1, compl...   131   4e-29
(O25598) UPF0076 protein HP_0944.  &AE000511_928(AE000511|pid:no...   130   9e-29
AM260522_1180(AM260522|pid:none) Helicobacter acinonychis str. S...   128   3e-28
CP000686_2882(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...   127   8e-28
BT039439_1(BT039439|pid:none) Zea mays full-length cDNA clone ZM...   126   1e-27
AB024036_15(AB024036|pid:none) Arabidopsis thaliana genomic DNA,...   125   2e-27
CT573071_938(CT573071|pid:none) Kuenenia stuttgartiensis genome ...   125   2e-27
protein update 2009. 3.24
PSORT 

 psg: 0.84  gvh: 0.14  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for VSI115 is nuc
5' end seq. ID VSI115F
5' end seq. 
>VSI115F.Seq
AGTTCAAGTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAAT
GCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTT
TCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGT
ATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCA
ATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTT
AACACTGTCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTT
GCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACC
GGAGGGTAAATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATA
GTTTATTCTATTATTGTNAAAAAGAAAAAAAAAA----------
Length of 5' end seq. 514
3' end seq. ID VSI115Z
3' end seq. 
>VSI115Z.Seq
----------ATCNAATTATAGTAAAATGACAGGAAAAAGTTGTAGTTAAAACCACTAAT
GCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTT
TCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGT
ATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCA
ATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTT
AACACTGTCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTT
GCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACC
GAGGGTAAATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAG
TTTATACTATTATGAAAAA
Length of 3' end seq. 489
Connected seq. ID VSI115P
Connected seq. 
>VSI115P.Seq
AGTTCAAGTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAAT
GCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTT
TCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGT
ATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCA
ATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTT
AACACTGTCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTT
GCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACC
GGAGGGTAAATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATA
GTTTATTCTATTATTGTNAAAAAGAAAAAAAAAA----------ATCNAATTATAGTAAA
ATGACAGGAAAAAGTTGTAGTTAAAACCACTAATGCACCAGGTGCTATTGGCCCATACAG
TCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGTTTAGGTATTGATAAAGA
TACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACTAAACTTGCTTTAACAAA
CATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAAGTTGTTAAAACTACCAT
CTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTCTATTCTACTTTCTTCCC
AGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCAAAGAATGCTTTAGT
AGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCAAATAATATCATCAA
TTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATACTATTATGAAAAA
Length of connected seq. 1003
Full length Seq ID -
Full length Seq. -
Length of full length seq. -