AHA677
Library AH
(Link to library)
Clone ID AHA677
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID AHA677P
(Link to Original site)
Representative DNA sequence
>AHA677 (AHA677Q) /CSM/AH/AHA6-D/AHA677Q.Seq.d/
AATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATTTTTCCCCT
ACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTTATTATTAA
AATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANGGTCAATTT
TACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAAAATATGTCTGT
TATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAAAGAGCTGG
TATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCANATGAACA
ATTAXXXXXXXXXXTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAAACA
TTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCC
AAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAAATTAAAGACTCTA
TGGTTCCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGAT
CGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTG
GTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAA
CACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTA
TCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTA
CTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTG
ATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTT
CAATTGGTATCGTTGGTCAAGANAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
iniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKKXVNF
TIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRPXEQ
L---

---NQDVKSRANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNKTKGCSISS*n*rlygs
sipmdlk*rcimw*eneidsfqrl*cnascrcns*r*wsiysnnsscnvclptisstntf
gtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywysiiqyqslsscngiiwshc*ft
fkycwssfpsmcf*slefnwyrwsrxk


Translated Amino Acid sequence (All Frames)
Frame A:
nkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*klsflkklkqkkxgqf
ynxsnsfnygssxkyqkyvcycsc*sw*nysy*finskswyycx*giw*criyvmssx*t
i---

---likmlkvvpiisminilgirmmqltfghlvqnirvqmf*ltkpkgvqylheikdsmv
pafqwisnegvlcgekmrsirfnvydvmlhadaihrgsgqfipttrrvmyasqlsaqptl
lepmylvdistpesgisgiysvlnrrrgvvigeerrigtplfnikaylpvmesfgltadl
rsstagqafpqcvfdhwssigivgqxkk

Frame B:
iniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKKXVNF
TIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRPXEQ
L---

---*src*kscqlsl**tflg*e*cs*hlviwsri*gskcfs*qnqrvfnifmklktlwf
qhsngsqmkvyyvvrk*drfvstfmm*cfmpmqfievvvnlfqqlvv*cmppnyqlnqhf
wnqciwlilvllkvvlvvstlysiveevlslvknvvlvlhysisklifl*wnhlvslliy
vqvllvklslnvfliigvqlvslvkxk

Frame C:
*illhiqnkinkt*tlffpyigqtliclctiilfkllllkfilktliskktktkkkxsil
qxikfvqlwivxkiskicllllmlimvkllllih*fkelvllxirylvmqdichvvxmnn
---

---NQDVKSRANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNKTKGCSISS*n*rlygs
sipmdlk*rcimw*eneidsfqrl*cnascrcns*r*wsiysnnsscnvclptisstntf
gtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywysiiqyqslsscngiiwshc*ft
fkycwssfpsmcf*slefnwyrwsrxk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AHA677 (AHA677Q) /CSM/AH/AHA6-D/AHA677Q.Seq.d/ 1522 0.0
VHB364 (VHB364Q) /CSM/VH/VHB3-C/VHB364Q.Seq.d/ 1195 0.0
SHF216 (SHF216Q) /CSM/SH/SHF2-A/SHF216Q.Seq.d/ 1195 0.0
SHA256 (SHA256Q) /CSM/SH/SHA2-C/SHA256Q.Seq.d/ 1195 0.0
AHM516 (AHM516Q) /CSM/AH/AHM5-A/AHM516Q.Seq.d/ 1195 0.0
AHL348 (AHL348Q) /CSM/AH/AHL3-B/AHL348Q.Seq.d/ 1195 0.0
AHE765 (AHE765Q) /CSM/AH/AHE7-C/AHE765Q.Seq.d/ 1195 0.0
AHD146 (AHD146Q) /CSM/AH/AHD1-B/AHD146Q.Seq.d/ 1195 0.0
AHC654 (AHC654Q) /CSM/AH/AHC6-C/AHC654Q.Seq.d/ 1195 0.0
AHB739 (AHB739Q) /CSM/AH/AHB7-B/AHB739Q.Seq.d/ 1195 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 137 8e-73 8
X15386|X15386.1 Dictyostelium discoideum H6 gene mRNA. 163 9e-41 2
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 2e-18 4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence. 66 4e-15 3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 4e-15 3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence. 92 2e-14 1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence. 90 7e-14 1
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence. 90 7e-14 1
BI502325|BI502325.1 kt88b08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 48 1e-11 3
AZ931993|AZ931993.1 474.dhz93a01.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz93a01.s1, DNA sequence. 82 2e-11 1
dna update 2004. 2.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 206 3e-62
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 204 8e-62
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 204 2e-61
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 204 3e-61
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 205 4e-61
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 204 4e-61
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 205 4e-61
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 204 4e-61
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 204 1e-60
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 204 1e-60
protein update 2009. 4.27
PSORT

psg: 0.80 gvh: 0.43 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for AHA677 is cyt

5' end seq. ID AHA677F
5' end seq.
>AHA677F.Seq
AATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATTTTTCCCCT
ACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTTATTATTAA
AATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANGGTCAATTT
TACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAAAATATGTCTGT
TATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAAAGAGCTGG
TATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCANATGAACA
ATTANNNNNNNNNN
Length of 5' end seq. 374
3' end seq. ID AHA677Z
3' end seq.
>AHA677Z.Seq
NNNNNNNNNNTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAAACATTCT
TGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAAAT
GTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGGT
TCCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGAT
TCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTCA
ATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACACT
TTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCTA
CTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTCC
ATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATTT
ACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAAT
TGGTATCGTTGGTCAAGANAAAAAA
Length of 3' end seq. 625
Connected seq. ID AHA677P
Connected seq.
>AHA677P.Seq
AATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATTTTTCCCCT
ACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTTATTATTAA
AATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANGGTCAATTT
TACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAAAATATGTCTGT
TATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAAAGAGCTGG
TATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCANATGAACA
ATTA----------TTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAAACA
TTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGGTCC
AAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAAATTAAAGACTCTA
TGGTTCCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGAT
CGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTG
GTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAA
CACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTA
TCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTA
CTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTG
ATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTT
CAATTGGTATCGTTGGTCAAGANAAAAAA
Length of connected seq. 979
Full length Seq ID -
Full length Seq. -
Length of full length seq. -