VSI103
Library VS
(Link to library)
Clone ID VSI103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSI103F
(Link to Original site)
Representative DNA sequence
>VSI103 (VSI103Q) /CSM/VS/VSI1-A/VSI103Q.Seq.d/
CAAAAAAATTAAAAAAACTATATAAAATTAAAGTTTTACTTATATAAAAAAAAAATATAT
ATAAATTTTAAAAAAAAAAAATTTAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
qkn*KNYIKLKFYLYKKKIYINFKKKKFKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
qkn*KNYIKLKFYLYKKKIYINFKKKKFKKK---


Frame B:
kkikkti*n*sftyikkkyi*ilkkknlkk---


Frame C:
kklkklykikvlli*kkniykf*kkki*kk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI103 (VSI103Q) /CSM/VS/VSI1-A/VSI103Q.Seq.d/ 1877 0.0
VSH388 (VSH388Q) /CSM/VS/VSH3-D/VSH388Q.Seq.d/ 1041 0.0
VSJ708 (VSJ708Q) /CSM/VS/VSJ7-A/VSJ708Q.Seq.d/ 1017 0.0
SLB674 (SLB674Q) /CSM/SL/SLB6-D/SLB674Q.Seq.d/ 1015 0.0
VSD492 (VSD492Q) /CSM/VS/VSD4-D/VSD492Q.Seq.d/ 1015 0.0
SLC844 (SLC844Q) /CSM/SL/SLC8-B/SLC844Q.Seq.d/ 1013 0.0
VSH770 (VSH770Q) /CSM/VS/VSH7-C/VSH770Q.Seq.d/ 993 0.0
VSI775 (VSI775Q) /CSM/VS/VSI7-D/VSI775Q.Seq.d/ 955 0.0
VSG466 (VSG466Q) /CSM/VS/VSG4-C/VSG466Q.Seq.d/ 942 0.0
VSI801 (VSI801Q) /CSM/VS/VSI8-A/VSI801Q.Seq.d/ 821 0.0

own update 2000.12.16
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 104
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 82
Effective length of database: 99,544,435,898
Effective search space: 8162643743636
Effective search space used: 8162643743636
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)









Dictyostelium discoideum cDNA Project Home



dna update 2009. 7. 2
Homology vs Protein

***** No hits found ******

Lambda K H
0.290 0.0936 0.205

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 20,533,489
protein update 2009. 3.24
PSORT

psg: 0.57 gvh: -0.10 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.41 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial

>> prediction for VSI103 is nuc

5' end seq. ID VSI103F
5' end seq.
>VSI103F.Seq
CAAAAAAATTAAAAAAACTATATAAAATTAAAGTTTTACTTATATAAAAAAAAAATATAT
ATAAATTTTAAAAAAAAAAAATTTAAAAAAAAAA----------
Length of 5' end seq. 94
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -