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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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VSH874
Library VS
(Link to library)
Clone ID VSH874
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH874P
(Link to Original site)
Representative DNA sequence 
>VSH874 (VSH874Q) /CSM/VS/VSH8-D/VSH874Q.Seq.d/
CGGAACGCGTGGGTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGT
AAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACT
AGCNAAAAAAAAAXXXXXXXXXXTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTAC
TAATAATAGTAAAGAAAATTCACCATTGGCACGTACATAATAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
gtrg*RILHCTYLNLLLIIVKKIHHWHVHNKKIYPFNGSLAKKK---

---KNSSLYLFKPFTNNSKENSPLART**k
Translated Amino Acid sequence (All Frames) 
Frame A:
rnawvknsslylfkpftnnskensplart**knisf*witsxkk---

---*rilhctylnllliivkkihhwhvhnkk

Frame B:
gtrg*RILHCTYLNLLLIIVKKIHHWHVHNKKIYPFNGSLAKKK---

---keffivpi*tfy****rkftigtyiikk

Frame C:
ervgkeffivpi*tfy****rkftigtyiikkyillmdh*xkk---

---KNSSLYLFKPFTNNSKENSPLART**k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH874 (VSH874Q) /CSM/VS/VSH8-D/VSH874Q.Seq.d/                        202   2e-51
VSI818 (VSI818Q) /CSM/VS/VSI8-A/VSI818Q.Seq.d/                        176   9e-44
VSE744 (VSE744Q) /CSM/VS/VSE7-B/VSE744Q.Seq.d/                        176   9e-44
VSB884 (VSB884Q) /CSM/VS/VSB8-D/VSB884Q.Seq.d/                        176   9e-44
VSB635 (VSB635Q) /CSM/VS/VSB6-B/VSB635Q.Seq.d/                        176   9e-44
VHP367 (VHP367Q) /CSM/VH/VHP3-C/VHP367Q.Seq.d/                        176   9e-44
SSM828 (SSM828Q) /CSM/SS/SSM8-B/SSM828Q.Seq.d/                        176   9e-44
SSM528 (SSM528Q) /CSM/SS/SSM5-B/SSM528Q.Seq.d/                        176   9e-44
SSM293 (SSM293Q) /CSM/SS/SSM2-D/SSM293Q.Seq.d/                        176   9e-44
SSK684 (SSK684Q) /CSM/SS/SSK6-D/SSK684Q.Seq.d/                        176   9e-44
own update 2003. 1.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268106) Dictyostelium discoideum vegetative cDNA clone:VS...   180   2e-50  2
(AU051944) Dictyostelium discoideum slug cDNA, clone SSC443.      155   9e-43  2
(C89678) Dictyostelium discoideum slug cDNA, clone SSA608.        155   9e-43  2
(AU076312) Dictyostelium discoideum slug cDNA, clone SSA116.      155   9e-43  2
(AU038148) Dictyostelium discoideum slug cDNA, clone SSH331.      155   9e-43  2
(C90113) Dictyostelium discoideum slug cDNA, clone SSI106.        155   9e-43  2
(AU039028) Dictyostelium discoideum slug cDNA, clone SSM293.      155   9e-43  2
(AU038255) Dictyostelium discoideum slug cDNA, clone SSH478.      155   9e-43  2
(AU038258) Dictyostelium discoideum slug cDNA, clone SSH481.      155   9e-43  2
(AU038265) Dictyostelium discoideum slug cDNA, clone SSH491.      155   9e-43  2
dna update 2009. 7. 2
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 299,301,569
protein update 2009. 3.24
PSORT 

 psg: 0.91  gvh: 0.34  alm: 0.35  top: 0.77  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSH874 is mit
5' end seq. ID VSH874F
5' end seq. 
>VSH874F.Seq
CGGAACGCGTGGGTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGT
AAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACT
AGCNAAAAAAAAA----------
Length of 5' end seq. 133
3' end seq. ID VSH874Z
3' end seq. 
>VSH874Z.Seq
----------TAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAA
GAAAATTCACCATTGGCACGTACATAATAAAAAAA
Length of 3' end seq. 85
Connected seq. ID VSH874P
Connected seq. 
>VSH874P.Seq
CGGAACGCGTGGGTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGT
AAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACT
AGCNAAAAAAAAA----------TAAAGAATTCTTCATTGTACCTATTTAAACCTTTTAC
TAATAATAGTAAAGAAAATTCACCATTGGCACGTACATAATAAAAAAA
Length of connected seq. 218
Full length Seq ID -
Full length Seq. -
Length of full length seq. -