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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH844
Library VS
(Link to library)
Clone ID VSH844
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15504-1
Original site URL
Representative seq. ID VSH844F
(Link to Original site)
Representative DNA sequence 
>VSH844 (VSH844Q) /CSM/VS/VSH8-B/VSH844Q.Seq.d/
CATATACACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCA
CATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTAT
GAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAAC
GCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTT
ATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACT
GGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGC
CGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTC
GACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTAATGT
ACTACAAACCAGGTGAAGTTGATCCAATCTTTTTATACTTXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
HIHRKSYHRMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGAN
AASEETEEDEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNPS
RVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVA*cttnqvkliqsfyt---
Translated Amino Acid sequence (All Frames) 
Frame A:
HIHRKSYHRMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGAN
AASEETEEDEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNPS
RVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVA*cttnqvkliqsfyt---


Frame B:
iytekvite*efskillvihmmnyaqmptq*lkstmv*smksklkwspli*mlkltlvpt
lllkkpkkmkvlimlvanklstllml*dllkphsiknptlvtlklt*rkflpnsltitqa
vltpskrmplilsnqfsvnstntnstlvkiwmlmvmslnvlqtr*s*snlfi---


Frame C:
ytqkklsqnesfqrycwlft**imlrclpnd*nqqwfnl*sps*nghh*frc*s*hwcqr
cf*rnrrr*rc**cw*qtsyqrc*cyetc*nlir*kilhwlh*slhegsscqtr*q*pkp
c*rlqkgcr*fcqissr*irriqilhw*kygc*wscrlmyykpgevdpifly---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH844 (VSH844Q) /CSM/VS/VSH8-B/VSH844Q.Seq.d/                       1031   0.0
VSI532 (VSI532Q) /CSM/VS/VSI5-B/VSI532Q.Seq.d/                       1017   0.0
VSG456 (VSG456Q) /CSM/VS/VSG4-C/VSG456Q.Seq.d/                       1017   0.0
VSG107 (VSG107Q) /CSM/VS/VSG1-A/VSG107Q.Seq.d/                       1017   0.0
VSF592 (VSF592Q) /CSM/VS/VSF5-D/VSF592Q.Seq.d/                       1017   0.0
VSF369 (VSF369Q) /CSM/VS/VSF3-C/VSF369Q.Seq.d/                       1017   0.0
VSD180 (VSD180Q) /CSM/VS/VSD1-D/VSD180Q.Seq.d/                       1017   0.0
VSA456 (VSA456Q) /CSM/VS/VSA4-C/VSA456Q.Seq.d/                       1017   0.0
VSA126 (VSA126Q) /CSM/VS/VSA1-B/VSA126Q.Seq.d/                       1017   0.0
VHJ547 (VHJ547Q) /CSM/VH/VHJ5-B/VHJ547Q.Seq.d/                       1017   0.0
own update 2003. 1.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268056) Dictyostelium discoideum vegetative cDNA clone:VS...  1031   0.0    1
(AU265977) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    2
(BJ423789) Dictyostelium discoideum cDNA clone:ddv50m11, 5' ...   942   0.0    2
(C23686) Dictyostelium discoideum gamete cDNA, clone FC-AE21.     942   0.0    2
(AU261296) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    2
(AU261489) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    2
(BJ442607) Dictyostelium discoideum cDNA clone:ddv50m11, 3' ...   942   0.0    2
(AU265127) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    2
(AU263604) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    2
(AU266509) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    2
dna update 2009. 7. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q10344) RecName: Full=Translationally-controlled tumor protein ...   127   2e-28
(Q4PF30) RecName: Full=Translationally-controlled tumor protein ...   125   8e-28
(Q5A860) RecName: Full=Translationally-controlled tumor protein ...   120   2e-26
FM992695_83(FM992695|pid:none) Candida dubliniensis CD36 chromos...   120   2e-26
CP000500_406(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   120   3e-26
(Q6FKB6) RecName: Full=Translationally-controlled tumor protein ...   119   4e-26
(Q6C4G1) RecName: Full=Translationally-controlled tumor protein ...   118   1e-25
AB372535_1(AB372535|pid:none) Cadophora gregata f. sp. adzukicol...   115   5e-25
(Q4IJT5) RecName: Full=Translationally-controlled tumor protein ...   115   8e-25
AE016815_286(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...   114   1e-24
protein update 2009. 3.24
PSORT 

 psg: 0.70  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSH844 is cyt
5' end seq. ID VSH844F
5' end seq. 
>VSH844F.Seq
CATATACACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCA
CATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTAT
GAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAAC
GCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTT
ATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACT
GGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGC
CGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTC
GACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTAATGT
ACTACAAACCAGGTGAAGTTGATCCAATCTTTTTATACTT----------
Length of 5' end seq. 520
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -