VSH834
Library VS
(Link to library)
Clone ID VSH834
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH834P
(Link to Original site)
Representative DNA sequence
>VSH834 (VSH834Q) /CSM/VS/VSH8-B/VSH834Q.Seq.d/
CATGTACATAATAATAAATAATAATACATTTAATAAAATAATAAAATAAATACTTTTTGT
AAAAACTTTAAAAAAAAAAXXXXXXXXXXCATGTACATAATAATAAATAATCATACATTT
ATAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
hvhnnk**yi**NNKINTFCKNFKKK---

---MYIIINNHTFIK


Translated Amino Acid sequence (All Frames)
Frame A:
hvhnnk**yi**NNKINTFCKNFKKK---

---hvhnnk*syiyk

Frame B:
myiiinnntfnkiik*ilfvktlkkk---

---MYIIINNHTFIK

Frame C:
ct***iiihlik**nkyfl*kl*kk---

---ct***iiihl*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH834 (VSH834Q) /CSM/VS/VSH8-B/VSH834Q.Seq.d/ 74 5e-13
VSI828 (VSI828Q) /CSM/VS/VSI8-B/VSI828Q.Seq.d/ 66 1e-10
VSJ631 (VSJ631Q) /CSM/VS/VSJ6-B/VSJ631Q.Seq.d/ 38 0.028
VSD730 (VSD730Q) /CSM/VS/VSD7-B/VSD730Q.Seq.d/ 36 0.11
VSK388 (VSK388Q) /CSM/VS/VSK3-D/VSK388Q.Seq.d/ 34 0.44
SSM490 (SSM490Q) /CSM/SS/SSM4-D/SSM490Q.Seq.d/ 34 0.44
SSI354 (SSI354Q) /CSM/SS/SSI3-C/SSI354Q.Seq.d/ 34 0.44
SSH891 (SSH891Q) /CSM/SS/SSH8-D/SSH891Q.Seq.d/ 34 0.44
SSG349 (SSG349Q) /CSM/SS/SSG3-C/SSG349Q.Seq.d/ 34 0.44
SSB530 (SSB530Q) /CSM/SS/SSB5-B/SSB530Q.Seq.d/ 34 0.44

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268042) Dictyostelium discoideum vegetative cDNA clone:VS... 74 1e-09 1
(AU269295) Dictyostelium discoideum vegetative cDNA clone:VS... 66 3e-07 1
(AC116967) Dictyostelium discoideum chromosome 2 map 5481549... 56 3e-04 1
(AU268041) Dictyostelium discoideum vegetative cDNA clone:VS... 56 3e-04 1
(AU270225) Dictyostelium discoideum vegetative cDNA clone:VS... 38 0.056 2
(CT591500) Danio rerio EST, clone ZF_mu_27l05 3'. 36 0.22 2
(AC152516) Bos taurus clone CH240-15I6, WORKING DRAFT SEQUEN... 46 0.28 1
(AC230628) Bos taurus clone CH240-503G14, WORKING DRAFT SEQU... 46 0.28 1
(EC354008) LIVERF089487P19 POSSUM_01-POSSUM-LIVER-2KB Tricho... 46 0.28 1
(AC188118) Pongo abelii chromosome UNK clone CH276-95H12, co... 44 1.1 1
dna update 2009. 6.30
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 80,258,638
protein update 2009. 3.24
PSORT

psg: 0.53 gvh: -0.13 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VSH834 is nuc

5' end seq. ID VSH834F
5' end seq.
>VSH834F.Seq
CATGTACATAATAATAAATAATAATACATTTAATAAAATAATAAAATAAATACTTTTTGT
AAAAACTTTAAAAAAAAAA----------
Length of 5' end seq. 79
3' end seq. ID VSH834Z
3' end seq.
>VSH834Z.Seq
----------CATGTACATAATAATAAATAATCATACATTTATAAAA
Length of 3' end seq. 37
Connected seq. ID VSH834P
Connected seq.
>VSH834P.Seq
CATGTACATAATAATAAATAATAATACATTTAATAAAATAATAAAATAAATACTTTTTGT
AAAAACTTTAAAAAAAAAA----------CATGTACATAATAATAAATAATCATACATTT
ATAAAA
Length of connected seq. 116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -