VSH813
Library VS
(Link to library)
Clone ID VSH813
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH813P
(Link to Original site)
Representative DNA sequence
>VSH813 (VSH813Q) /CSM/VS/VSH8-A/VSH813Q.Seq.d/
CCATTCCAAACTCGTTCATGGTNTCATAAATATCAACACATTTACGCTCCACTCCTGXXX
XXXXXXXTTTACGCTCCCACTCCTNCTATGGTATTTACACACTCCAAATATCGTACTCAA
GATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACA
AATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATC
CTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTC
GTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAA
TTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATC
CTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGT
GGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTAC
CCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATT
AAACCAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAAT
GATCCAGATTATGTTAAAAAACCATTAGCCTCAAAAGANATTAAANNAATAACTTAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
PFQTRSWXHKYQHIYAPLL---

---YAPTPXMVFTHSKYRTQDWEAFVKDGKNGAIRVSVATNFDKAAYVIGKLSFVFFRFI
LPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFATPERPDEPSQINEDWAI
LQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVPIVKEVCKEHNITYHI
KPNFTEAIMSHINYLYKMGNDPDYVKKPLASKXIKXIT*


Translated Amino Acid sequence (All Frames)
Frame A:
PFQTRSWXHKYQHIYAPLL---

---ftlplllwylhtpnivlkigkll*rmvkmvqfvlvspqisirpltslvncllfssvs
sfhsviialqi*fvissllnsslvgisqlisklvmslkisnsllplkdqmnhlksmkigq
sfnlkllkimvmvhsfvpflvvl*iiklfiiyshqllkisthnlyql*kkfvknitlltt
lnqtslkllchtlitftkwvmiqimlknh*pqkxlxx*lk

Frame B:
hsklvhgxinintftlhs---

---lrshsxygiytlqisysrlgsfckgw*kwcnsc*crhkfr*grlrhw*ivfcflpfh
pstpls*lyrfnllfphc*irlwlvshn*fps*scr*rsqilcyp*ktr*tisnq*rlgn
pst*nysrlwswftplylf*wffkssscssfipincsrflpttctnckrsl*rt*hylph
*tklh*syyvth*lplqng**srlc*ktislkrx*xnnl

Frame C:
ipnsfmvs*isthlrstp---

---YAPTPXMVFTHSKYRTQDWEAFVKDGKNGAIRVSVATNFDKAAYVIGKLSFVFFRFI
LPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFFATPERPDEPSQINEDWAI
LQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQLVPIVKEVCKEHNITYHI
KPNFTEAIMSHINYLYKMGNDPDYVKKPLASKXIKXIT*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH813 (VSH813Q) /CSM/VS/VSH8-A/VSH813Q.Seq.d/ 1334 0.0
VFM295 (VFM295Q) /CSM/VF/VFM2-D/VFM295Q.Seq.d/ 1225 0.0
VFI562 (VFI562Q) /CSM/VF/VFI5-C/VFI562Q.Seq.d/ 1219 0.0
VFN123 (VFN123Q) /CSM/VF/VFN1-A/VFN123Q.Seq.d/ 1211 0.0
VFK547 (VFK547Q) /CSM/VF/VFK5-B/VFK547Q.Seq.d/ 1207 0.0
CFC256 (CFC256Q) /CSM/CF/CFC2-C/CFC256Q.Seq.d/ 1207 0.0
VFE188 (VFE188Q) /CSM/VF/VFE1-D/VFE188Q.Seq.d/ 1203 0.0
SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ 1203 0.0
SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/ 1203 0.0
SLA256 (SLA256Q) /CSM/SL/SLA2-C/SLA256Q.Seq.d/ 1203 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268015) Dictyostelium discoideum vegetative cDNA clone:VS... 1267 0.0 1
(BJ433617) Dictyostelium discoideum cDNA clone:ddv22m11, 3' ... 1207 0.0 1
(BJ435057) Dictyostelium discoideum cDNA clone:ddv25m24, 3' ... 1199 0.0 3
(BJ435920) Dictyostelium discoideum cDNA clone:ddv28p20, 3' ... 1191 0.0 1
(BJ435453) Dictyostelium discoideum cDNA clone:ddv27m05, 3' ... 1185 0.0 3
(CS204284) Sequence 45 from Patent EP1598422. 1178 0.0 3
(BD092935) Methods and compositions for synthesis of long ch... 1178 0.0 3
(BD082645) Methods and compositions for synthesis of long ch... 1178 0.0 3
(BD082630) Methods and compositions for synthesis of long ch... 1178 0.0 3
(C25549) Dictyostelium discoideum slug cDNA, clone SLA256. 1178 0.0 3
dna update 2009. 6.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 444 e-124
(O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 296 3e-79
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 243 3e-63
AF419297_1(AF419297|pid:none) Pythium irregulare delta-5 fatty a... 153 4e-36
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5... 145 9e-34
(O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 143 6e-33
CP000592_278(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 142 1e-32
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ... 128 1e-28
CQ831428_1(CQ831428|pid:none) Sequence 9 from Patent WO2004057001. 125 9e-28
CS020137_1(CS020137|pid:none) Sequence 91 from Patent WO20050123... 121 2e-26
protein update 2009. 3.24
PSORT

psg: 0.88 gvh: 0.46 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: mitochondrial
12.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for VSH813 is mit

5' end seq. ID VSH813F
5' end seq.
>VSH813F.Seq
CCATTCCAAACTCGTTCATGGTNTCATAAATATCAACACATTTACGCTCCACTCCTG---
-------
Length of 5' end seq. 57
3' end seq. ID VSH813Z
3' end seq.
>VSH813Z.Seq
----------TTTACGCTCCCACTCCTNCTATGGTATTTACACACTCCAAATATCGTACT
CAAGATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCC
ACAAATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTC
ATCCTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAA
TTCGTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTC
AAATTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCA
ATCCTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTT
AGTGGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTC
TACCCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCAC
ATTAAACCAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGT
AATGATCCAGATTATGTTAAAAAACCATTAGCCTCAAAAGANATTAAANNAATAACTTAA
A
Length of 3' end seq. 651
Connected seq. ID VSH813P
Connected seq.
>VSH813P.Seq
CCATTCCAAACTCGTTCATGGTNTCATAAATATCAACACATTTACGCTCCACTCCTG---
-------TTTACGCTCCCACTCCTNCTATGGTATTTACACACTCCAAATATCGTACTCAA
GATTGGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACA
AATTTCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATC
CTTCCACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTC
GTCTTTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAA
TTCTTTGCTACCCCTGAAAGACCAGATGAACCATCTCAAATCAATGAAGATTGGGCAATC
CTTCAACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGT
GGTTCTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTAC
CCACAACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATT
AAACCAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAAT
GATCCAGATTATGTTAAAAAACCATTAGCCTCAAAAGANATTAAANNAATAACTTAAA
Length of connected seq. 708
Full length Seq ID -
Full length Seq. -
Length of full length seq. -