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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH782
Library VS
(Link to library)
Clone ID VSH782
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14496-1
Original site URL
Representative seq. ID VSH782P
(Link to Original site)
Representative DNA sequence 
>VSH782 (VSH782Q) /CSM/VS/VSH7-D/VSH782Q.Seq.d/
TTAAAATGCCAACCAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTT
ACGGTCGTGTTGGTAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCA
CTCATCACAGAATTAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGA
GACATTTCCATTTATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCT
GGACTTTAGTCCCAGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTC
CAGTTGTTGATGTCACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAA
CTCAACCAATCATCGTCAAAGCTCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAG
CTGTCGGTGGTGCTTGTATCTTAGTTGCTTAAATATTTTATACGAATCAATAAATATAAA
TAAAAAAAGTAATTAAATTTAAAAAATAAAAAAAAAAXXXXXXXXXXTTAAAATGCCAAC
CAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTTACGGTCGTGTTGG
TAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCACTCATCACAGAAT
TAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGAGACATTTCCATTT
ATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCTGGACTTTAGTCCC
AGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTCCAGTTGTTGATGT
CACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAACTCAACCAATCAT
CGTCAAAGCTCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAGCTGTCGGTGGTGC
TTGTATCTTAGTTGCTTAAATATTTTATACGAATCAATAAATATAAATAAAAAAAGNAAT
TAAATTAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
lkcqpdsvsienqevtfvpvtvvlvntesiqvvvvmlvvsliteltltntiqvisvn*v*
disiy*etntivqpsh*krsgl*sqnpsenh*lprmtvllqllmspkkvsskf*vtvssq
lnqsssklvislkslkrksklsvvlvs*llkyfirinkyk*kk*LNLKNKKK---

---KMPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKL
GMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGI
LPTQPIIVKARYFSKVAEKKIKAVGGACILVA*ifytnq*i*ikkxiklk
Translated Amino Acid sequence (All Frames) 
Frame A:
lkcqpdsvsienqevtfvpvtvvlvntesiqvvvvmlvvsliteltltntiqvisvn*v*
disiy*etntivqpsh*krsgl*sqnpsenh*lprmtvllqllmspkkvsskf*vtvssq
lnqsssklvislkslkrksklsvvlvs*llkyfirinkyk*kk*LNLKNKKK---

---lkcqpdsvsienqevtfvpvtvvlvntesiqvvvvmlvvsliteltltntiqvisvn
*v*disiy*etntivqpsh*krsgl*sqnpsenh*lprmtvllqllmspkkvsskf*vtv
ssqlnqsssklvislkslkrksklsvvlvs*llkyfirinkyk*kkxln*k

Frame B:
*nanqiq*a*kikr*rlcrlrscw*tqkasrwsw*cwwshssqn*l*qipsrlfr*irye
tfpfikkpiplsnrlirkdldfsprirqkiiscqe*rycssc*chpkrflqsfrsryppn
stnhrqsslfl*sr*kenqscrwclylsclnilyesininkksn*i*kikkk---

---*nanqiq*a*kikr*rlcrlrscw*tqkasrwsw*cwwshssqn*l*qipsrlfr*i
ryetfpfikkpiplsnrlirkdldfsprirqkiiscqe*rycssc*chpkrflqsfrsry
ppnstnhrqsslfl*sr*kenqscrwclylsclnilyesininkkxn*ik

Frame C:
kmptrfskhrksrgdvcagygrvgkhrkhpggrgnagglthhrinfdkyhpgyfgklgmr
hfhllrnqyhcptvslekiwtlvpesvrkslaakndgtapvvdvtqkgffkvlghgilpt
qpiivkaryfskvaekkikavggacilva*ifytnq*i*ikkvikfkk*kk---

---KMPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKL
GMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGI
LPTQPIIVKARYFSKVAEKKIKAVGGACILVA*ifytnq*i*ikkxiklk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ737 (VSJ737Q) /CSM/VS/VSJ7-B/VSJ737Q.Seq.d/                        928   0.0
VSI571 (VSI571Q) /CSM/VS/VSI5-C/VSI571Q.Seq.d/                        928   0.0
VSH826 (VSH826Q) /CSM/VS/VSH8-B/VSH826Q.Seq.d/                        928   0.0
VSH782 (VSH782Q) /CSM/VS/VSH7-D/VSH782Q.Seq.d/                        928   0.0
VSF775 (VSF775Q) /CSM/VS/VSF7-D/VSF775Q.Seq.d/                        928   0.0
VSE523 (VSE523Q) /CSM/VS/VSE5-A/VSE523Q.Seq.d/                        928   0.0
VSE358 (VSE358Q) /CSM/VS/VSE3-C/VSE358Q.Seq.d/                        928   0.0
VSE309 (VSE309Q) /CSM/VS/VSE3-A/VSE309Q.Seq.d/                        928   0.0
VSE196 (VSE196Q) /CSM/VS/VSE1-D/VSE196Q.Seq.d/                        928   0.0
VSD784 (VSD784Q) /CSM/VS/VSD7-D/VSD784Q.Seq.d/                        928   0.0
own update 2002. 8. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270392) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU268909) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU267964) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU267963) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU266434) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU265773) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU264565) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU263167) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU263048) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
(AU263011) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    1
dna update 2009. 6.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P48160) RecName: Full=60S ribosomal protein L27a;  &D50338_1(D5...   313   8e-84
BT046766_1(BT046766|pid:none) Salmo salar clone ssal-eve-548-138...   226   7e-58
AY961477_1(AY961477|pid:none) Phytophthora infestans clone MY-19...   226   1e-57
AF502247_1(AF502247|pid:none) Epinephelus coioides ribosomal pro...   223   1e-56
AJ843085_1(AJ843085|pid:none) Platichthys flesus mRNA for 60S ri...   223   1e-56
(P18445) RecName: Full=60S ribosomal protein L27a;  &R5RTLA(S130...   222   1e-56
AB374966_1(AB374966|pid:none) Solea senegalensis RPL27a mRNA for...   221   2e-56
(P46776) RecName: Full=60S ribosomal protein L27a;  &(Q5REY2) Re...   221   2e-56
AJ307670_3(AJ307670|pid:none) Mus musculus St5 gene, L27a gene a...   221   2e-56
AB172987_1(AB172987|pid:none) Macaca fascicularis brain cDNA clo...   220   5e-56
protein update 2009. 3.24
PSORT 

 psg: 0.59  gvh: 0.18  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.13
 nuc: 0.27  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSH782 is cyt
5' end seq. ID VSH782F
5' end seq. 
>VSH782F.Seq
TTAAAATGCCAACCAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTT
ACGGTCGTGTTGGTAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCA
CTCATCACAGAATTAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGA
GACATTTCCATTTATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCT
GGACTTTAGTCCCAGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTC
CAGTTGTTGATGTCACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAA
CTCAACCAATCATCGTCAAAGCTCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAG
CTGTCGGTGGTGCTTGTATCTTAGTTGCTTAAATATTTTATACGAATCAATAAATATAAA
TAAAAAAAGTAATTAAATTTAAAAAATAAAAAAAAAA----------
Length of 5' end seq. 517
3' end seq. ID VSH782Z
3' end seq. 
>VSH782Z.Seq
----------TTAAAATGCCAACCAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTT
TGTGCCGGTTACGGTCGTGTTGGTAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCT
GGTGGTCTCACTCATCACAGAATTAACTTTGACAAATACCATCCAGGTTATTTCGGTAAA
TTAGGTATGAGACATTTCCATTTATTAAGAAACCAATACCATTGTCCAACCGTCTCATTA
GAAAAGATCTGGACTTTAGTCCCAGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGAC
GGTACTGCTCCAGTTGTTGATGTCACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGT
ATCCTCCCAACTCAACCAATCATCGTCAAAGCTCGTTATTTCTCTAAAGTCGCTGAAAAG
AAAATCAAAGCTGTCGGTGGTGCTTGTATCTTAGTTGCTTAAATATTTTATACGAATCAA
TAAATATAAATAAAAAAAGNAATTAAATTAAAAA
Length of 3' end seq. 504
Connected seq. ID VSH782P
Connected seq. 
>VSH782P.Seq
TTAAAATGCCAACCAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTT
ACGGTCGTGTTGGTAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCA
CTCATCACAGAATTAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGA
GACATTTCCATTTATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCT
GGACTTTAGTCCCAGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTC
CAGTTGTTGATGTCACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAA
CTCAACCAATCATCGTCAAAGCTCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAG
CTGTCGGTGGTGCTTGTATCTTAGTTGCTTAAATATTTTATACGAATCAATAAATATAAA
TAAAAAAAGTAATTAAATTTAAAAAATAAAAAAAAAA----------TTAAAATGCCAAC
CAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTTACGGTCGTGTTGG
TAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCACTCATCACAGAAT
TAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGAGACATTTCCATTT
ATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCTGGACTTTAGTCCC
AGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTCCAGTTGTTGATGT
CACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAACTCAACCAATCAT
CGTCAAAGCTCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAGCTGTCGGTGGTGC
TTGTATCTTAGTTGCTTAAATATTTTATACGAATCAATAAATATAAATAAAAAAAGNAAT
TAAATTAAAAA
Length of connected seq. 1021
Full length Seq ID -
Full length Seq. -
Length of full length seq. -