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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH780
Library VS
(Link to library)
Clone ID VSH780
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05548-1
Original site URL
Representative seq. ID VSH780Z
(Link to Original site)
Representative DNA sequence 
>VSH780 (VSH780Q) /CSM/VS/VSH7-D/VSH780Q.Seq.d/
XXXXXXXXXXAAAAATANTAANANTTTTTTTTTNAAAAAAAAAAACNAATAAAAATNAAA
TGGCNAAAANACCCATTAANANACCAGCAACTTCANGAAAAANTAAANTTGGAATTACTC
CATCATCTAACAAANCACCATCATTATNTCCNTTTCCAGCNAAAGG
sequence update 2001. 3.22
Translated Amino Acid sequence 
---KIXXXFFXKKKTNKNXMAKXPIXXPATSXKXKXGITPSSNKXPSLXPFPAK
Translated Amino Acid sequence (All Frames) 
Frame A:
---KIXXXFFXKKKTNKNXMAKXPIXXPATSXKXKXGITPSSNKXPSLXPFPAK


Frame B:
---kx*xfffxkkkxikxkwxkxplxxqqlxekxxlellhhltxhhhyxxfqxk


Frame C:
---nxxxffxkkknx*kxngxxth*xtsnfxkx*xwnysii*qxtiixsxssxr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH780 (VSH780Q) /CSM/VS/VSH7-D/VSH780Q.Seq.d/                        165   2e-40
SSJ455 (SSJ455Q) /CSM/SS/SSJ4-C/SSJ455Q.Seq.d/                        133   9e-31
own update 2001. 3.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267961) Dictyostelium discoideum vegetative cDNA clone:VS...   165   6e-37  1
(AU074073) Dictyostelium discoideum slug cDNA, clone SSJ455.      139   3e-29  1
(C91074) Dictyostelium discoideum slug cDNA, clone SSJ455.        131   8e-27  1
dna update 2009. 6.30
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 82,684,637
protein update 2009. 3.24
PSORT 

 psg: 0.54  gvh: 0.39  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for VSH780 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSH780Z
3' end seq. 
>VSH780Z.Seq
----------AAAAATANTAANANTTTTTTTTTNAAAAAAAAAAACNAATAAAAATNAAA
TGGCNAAAANACCCATTAANANACCAGCAACTTCANGAAAAANTAAANTTGGAATTACTC
CATCATCTAACAAANCACCATCATTATNTCCNTTTCCAGCNAAAGG
Length of 3' end seq. 156
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -