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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH747
Library VS
(Link to library)
Clone ID VSH747
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16249-1
Original site URL
Representative seq. ID VSH747Z
(Link to Original site)
Representative DNA sequence 
>VSH747 (VSH747Q) /CSM/VS/VSH7-B/VSH747Q.Seq.d/
XXXXXXXXXXGGCCAGATCTCTCATTATTTTTGGTTCTATCCAACCAAACCCAAATTTCC
CAACTGAAGCAAAAGATTTAAAAGTTGTAAGAGTTTATAAATCATTACCATTAGGTAACC
CAGCATCAGCAACTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTA
CCCCATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTG
ATATACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGAT
CTAAAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAA
AAATTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCAT
TGCCATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTT
GTTTAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTC
CAGCAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATT
ATTGNATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTC
sequence update 2001. 3.22
Translated Amino Acid sequence 
---ARSLIIFGSIQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTT
PCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGK
ITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCP
AGYRLDQFRATEANGCPKYYXIQPLFVKHINFFFC*f
Translated Amino Acid sequence (All Frames) 
Frame A:
---ARSLIIFGSIQPNPNFPTEAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTT
PCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGK
ITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCP
AGYRLDQFRATEANGCPKYYXIQPLFVKHINFFFC*f


Frame B:
---pdlslflvlsnqtqisqlkqki*kl*efinhyh*vtqhqqliniiflvimvsdvslp
hvhqqmqfy*isvlnkllviyschiqrtlvnililhg*dlkqldqmtmv*svkvhsvvek
lqyqmlsfiyqiqlvnvihchy*nvqvvrl*htlvmkivv*llqlalnlhsvpwvchfvq
qviv*inseqlkqmdvqniixsnlcl*ntlisffvnf


Frame C:
---qishyfwfyptkpkfpn*skrfkscksl*iitir*psisn**ilyfw**wcqmchyp
mcinrcsfieypy*tnc**ythaifkerw*if*fcmvri*ns*ir*lwfnrsryiq*wkn
ynikcfhsftrsnw*m*fiaiikmsrwfdydils**kslfsfsnlhsifilylgyatlss
rlsfrsiqsn*skwmskillxptfvckth*flfllif
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH747 (VSH747Q) /CSM/VS/VSH7-B/VSH747Q.Seq.d/                       1239   0.0
SSI294 (SSI294Q) /CSM/SS/SSI2-D/SSI294Q.Seq.d/                       1225   0.0
SSG158 (SSG158Q) /CSM/SS/SSG1-C/SSG158Q.Seq.d/                       1225   0.0
SSE726 (SSE726Q) /CSM/SS/SSE7-B/SSE726Q.Seq.d/                       1225   0.0
SLE537 (SLE537Q) /CSM/SL/SLE5-B/SLE537Q.Seq.d/                       1219   0.0
SSI514 (SSI514Q) /CSM/SS/SSI5-A/SSI514Q.Seq.d/                       1217   0.0
SSG136 (SSG136Q) /CSM/SS/SSG1-B/SSG136Q.Seq.d/                       1183   0.0
SSE548 (SSE548Q) /CSM/SS/SSE5-B/SSE548Q.Seq.d/                       1179   0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/                       1172   0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                       1152   0.0
own update 2001.12. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267909) Dictyostelium discoideum vegetative cDNA clone:VS...  1235   0.0    1
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.       1174   0.0    2
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.       1174   0.0    2
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.       1174   0.0    2
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537.     1172   0.0    2
(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.       1166   0.0    2
(C90045) Dictyostelium discoideum slug cDNA, clone SSG136.       1136   0.0    2
(C92441) Dictyostelium discoideum slug cDNA, clone SSE548.       1132   0.0    2
(AU038984) Dictyostelium discoideum slug cDNA, clone SSM240.     1104   0.0    2
(C91564) Dictyostelium discoideum slug cDNA, clone SSK447.       1104   0.0    3
dna update 2009. 6.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   412   e-114
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   251   2e-65
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   173   3e-42
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    71   3e-11
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    45   0.001
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    42   0.011
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    40   0.043
CP000282_3256(CP000282|pid:none) Saccharophagus degradans 2-40, ...    35   1.4
AB267386_1(AB267386|pid:none) Nepenthes alata NaTLP1c mRNA for t...    34   3.1
AB267385_1(AB267385|pid:none) Nepenthes alata NaTLP1b mRNA for t...    34   3.1
protein update 2009. 3.24
PSORT 

 psg: 0.94  gvh: 0.41  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSH747 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSH747Z
3' end seq. 
>VSH747Z.Seq
----------GGCCAGATCTCTCATTATTTTTGGTTCTATCCAACCAAACCCAAATTTCC
CAACTGAAGCAAAAGATTTAAAAGTTGTAAGAGTTTATAAATCATTACCATTAGGTAACC
CAGCATCAGCAACTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTA
CCCCATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTG
ATATACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGAT
CTAAAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAA
AAATTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCAT
TGCCATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTT
GTTTAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTC
CAGCAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATT
ATTGNATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTC
Length of 3' end seq. 645
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -