AFB841 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFB841
Library	AF (Link to library)
Clone ID	AFB841 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16463-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFB8-B/AFB841Q.Seq.d/
Representative seq. ID	AFB841P (Link to Original site)
Representative DNA sequence	>AFB841 (AFB841Q) /CSM/AF/AFB8-B/AFB841Q.Seq.d/ ATATATTTTATTTGGGAAAAATAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAA CCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATG GTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAAC GTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTA CCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAA CACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAA GAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCG GTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATA CACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAG GTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGXXXXXXXX XXAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAA AGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTT TGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATC ACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTT AGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAA AAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTA TCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGA CGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACC AGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGT CGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTA CAAGGCNGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTNATGTTAATAT GTCATCAAATTCGCTGCTAGATCAAACT
sequence update	2001. 6. 1
Translated Amino Acid sequence	ifylgkiink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRER IPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSER DPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLG QTPESTHQVSILFSDR--- ---DALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIE PSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGP NYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSN LVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIXVNMSSNSLLDQT
Translated Amino Acid sequence (All Frames)	Frame A: iyfiwek*inkicqlqfppvvvhqlititqpqvlmvqffkisllinllisivn vsqnvlymlkvlvpmvisklpqvmyqngvklnsiklvrehqsspvslllvvkkvhpilk eiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif* vkhqnqhikyqfyslie--- ---kmpsivsihsmqrfghtktihfklvvwfiviqritllklnklpshhptwfqvl nhhqircykvvssliqilivivvtinksqsivhsprvvlkttnvmvswlsmvmvvkv qtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvssl isvtcpvspskkfkfvpfqtftrxtkivlvyvrvlvxmlichqircik Frame B: yilfgknnkinkyvsssfnhqwftn*qfklndrrcwsnfnsrfhfn*tcsfrst yprtcctcrcwcpwlfrsylkctkmvsilkswentnlhpflycwwkrfirfk rskrfrcqilyrrlygryssflyssikiprfhsytktstnklrskyvlgffr sntrintssinfil*r--- ---rclkvsfqsircnkdlvtqrlsinsnwsygfessrellcstsclltiphgsry* titrdvtrsslllsryssssfrcklstnpsqlsirrkgwcklptwfhgcqwwwrs klstklfrwsratsricstirlwfrcsstiqsskrlcstrfithvrcqisfrl fsrshvrchhqrnssscrfkllqgxqrfrcsfmgswyxcyvikfaarsn Frame C: ifylgkiink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRER IPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSER DPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLG QTPESTHQVSILFSDR--- ---DALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIE PSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGP NYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSN LVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIXVNMSSNSLLDQT
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFB841 (AFB841Q) /CSM/AF/AFB8-B/AFB841Q.Seq.d/ 2399 0.0 CFI634 (CFI634Q) /CSM/CF/CFI6-B/CFI634Q.Seq.d/ 1348 0.0 CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1348 0.0 AFE294 (AFE294Q) /CSM/AF/AFE2-D/AFE294Q.Seq.d/ 1348 0.0 CFA669 (CFA669Q) /CSM/CF/CFA6-C/CFA669Q.Seq.d/ 1342 0.0 AFI691 (AFI691Q) /CSM/AF/AFI6-D/AFI691Q.Seq.d/ 1342 0.0 AFE708 (AFE708Q) /CSM/AF/AFE7-A/AFE708Q.Seq.d/ 1342 0.0 AFE574 (AFE574Q) /CSM/AF/AFE5-D/AFE574Q.Seq.d/ 1342 0.0 SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1334 0.0 SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1334 0.0
own update	2009. 4. 3
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF090443\|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1289 0.0 3 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1289 0.0 5 AB064338\|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 4e-65 7 E65314\|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 3e-33 4 AP004595\|AP004595.1 Oceanobacillus iheyensis genomic DNA, section 3/13. 72 2e-32 7 AX536932\|AX536932.1 Sequence 533 from Patent WO02064766. 101 2e-29 3 AJ400965\|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 1e-27 3 AJ400964\|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 1e-27 3 AB006327\|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 7e-27 3 U40704\|U40704.1 Candida albicans catalase (Cat) gene, complete cds. 86 1e-26 3
dna update	2003. 7.24
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF090443_1(AF090443\|pid:none) Dictyostelium discoideum catalase ... 458 e-127 AY378080_1(AY378080\|pid:none) Tetrahymena thermophila putative c... 299 1e-79 (O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 293 7e-78 CP000300_481(CP000300\|pid:none) Methanococcoides burtonii DSM 62... 288 4e-76 (Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 279 2e-73 CQ796333_1(CQ796333\|pid:none) Sequence 109 from Patent WO2004027... 274 4e-72 AE017333_3935(AE017333\|pid:none) Bacillus licheniformis DSM 13, ... 274 4e-72 CP000560_826(CP000560\|pid:none) Bacillus amyloliquefaciens FZB42... 273 9e-72 (P90682) RecName: Full=Catalase; EC=1.11.1.6; &Y10611_... 273 1e-71 (P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 272 2e-71
protein update	2009. 3.27
PSORT	psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 28.0 %: cytoplasmic 28.0 %: nuclear 20.0 %: extracellular, including cell wall 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for AFB841 is cyt
5' end seq. ID	AFB841F
5' end seq.	>AFB841F.Seq ATATATTTTATTTGGGAAAAATAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAA CCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATG GTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAAC GTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTA CCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAA CACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAA GAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCG GTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATA CACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAG GTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGG-------- --
Length of 5' end seq.	592
3' end seq. ID	AFB841Z
3' end seq.	>AFB841Z.Seq ----------AAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTGG TCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAG AATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATT GAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGT CATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGT GGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGT CCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACAT AAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTT GTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCT AATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCA AACTTTTACAAGGCNGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTNAT GTTAATATGTCATCAAATTCGCTGCTAGATCAAACT
Length of 3' end seq.	686
Connected seq. ID	AFB841P
Connected seq.	>AFB841P.Seq ATATATTTTATTTGGGAAAAATAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAA CCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATG GTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAAC GTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTA CCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAA CACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAA GAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCG GTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATA CACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAG GTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGG-------- --AAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAA AGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTT TGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATC ACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTT AGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAA AAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTA TCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGA CGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACC AGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGT CGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTA CAAGGCNGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTNATGTTAATAT GTCATCAAATTCGCTGCTAGATCAAACT
Length of connected seq.	1278
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas