VSH682
Library VS
(Link to library)
Clone ID VSH682
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13793-1
Original site URL
Representative seq. ID VSH682P
(Link to Original site)
Representative DNA sequence
>VSH682 (VSH682Q) /CSM/VS/VSH6-D/VSH682Q.Seq.d/
CATAAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTC
CAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTG
CCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGG
TCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAG
TTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATA
ACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCG
CCAAGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAA
TAAATACACATAAAGTTAAAACAATATAAAAAAAAAAXXXXXXXXXXCATAAATAATGTC
AAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTGT
CATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTAT
CAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCGT
CAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAG
AAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTAT
GTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTC
CGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATAA
AGTTA
sequence update 2001. 3.22
Translated Amino Acid sequence
hk*cqkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviw
swlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqs
prnapiygqrlppmpvplfk*IHIKLKQYKKK---

---INNVKSTSRR**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw
*yghgyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsr
tsrqgmlrfmakgchqcryhclnkyt*s


Translated Amino Acid sequence (All Frames)
Frame A:
hk*cqkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviw
swlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqs
prnapiygqrlppmpvplfk*IHIKLKQYKKK---

---hk*cqkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvl
viwswlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfs
dqsprnapiygqrlppmpvplfk*ihikl

Frame B:
innvkstsrr**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw*yg
hgyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrtsr
qgmlrfmakgchqcryhclnkyt*s*nnikkk---

---INNVKSTSRR**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw
*yghgyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsr
tsrqgmlrfmakgchqcryhclnkyt*s

Frame C:
*imskaqavgsnyrvslglpvgavmnsadnsgaknlyviavkgikgrlnrlpsagvgdmv
matvkkgkpelrkkvctglvvrqrkhwkrkdgvyiyfednagvmcnpkgevkgnilgpva
kecsdlwpkvatnagtiv*inthkvkti*kk---

---*imskaqavgsnyrvslglpvgavmnsadnsgaknlyviavkgikgrlnrlpsagvg
dmvmatvkkgkpelrkkvctglvvrqrkhwkrkdgvyiyfednagvmcnpkgevkgnilg
pvakecsdlwpkvatnagtiv*inthkv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK191 (VSK191Q) /CSM/VS/VSK1-D/VSK191Q.Seq.d/ 886 0.0
VSJ725 (VSJ725Q) /CSM/VS/VSJ7-B/VSJ725Q.Seq.d/ 886 0.0
VSJ286 (VSJ286Q) /CSM/VS/VSJ2-D/VSJ286Q.Seq.d/ 886 0.0
VSJ195 (VSJ195Q) /CSM/VS/VSJ1-D/VSJ195Q.Seq.d/ 886 0.0
VSJ186 (VSJ186Q) /CSM/VS/VSJ1-D/VSJ186Q.Seq.d/ 886 0.0
VSI870 (VSI870Q) /CSM/VS/VSI8-C/VSI870Q.Seq.d/ 886 0.0
VSI106 (VSI106Q) /CSM/VS/VSI1-A/VSI106Q.Seq.d/ 886 0.0
VSH682 (VSH682Q) /CSM/VS/VSH6-D/VSH682Q.Seq.d/ 886 0.0
VSF856 (VSF856Q) /CSM/VS/VSF8-C/VSF856Q.Seq.d/ 886 0.0
VSF787 (VSF787Q) /CSM/VS/VSF7-D/VSF787Q.Seq.d/ 886 0.0

own update 2001.11.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU270782) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU270371) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU269700) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU269558) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU269540) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU269371) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU268155) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU267820) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU265901) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
(AU265793) Dictyostelium discoideum vegetative cDNA clone:VS... 886 0.0 1
dna update 2009. 6.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q6PC14) RecName: Full=60S ribosomal protein L23; &AY684289_1(A... 206 8e-52
AK012694_1(AK012694|pid:none) Mus musculus 10, 11 days embryo wh... 206 1e-51
BC102556_1(BC102556|pid:none) Bos taurus ribosomal protein L23, ... 205 1e-51
BT058333_1(BT058333|pid:none) Salmo salar clone Contig3997 60S r... 205 2e-51
EU042114_1(EU042114|pid:none) Epinephelus coioides ribosomal pro... 205 2e-51
BC003518_1(BC003518|pid:none) Homo sapiens, Similar to ribosomal... 205 2e-51
BC073541_1(BC073541|pid:none) Xenopus laevis MGC82808 protein, m... 203 5e-51
CP000498_170(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 203 5e-51
(Q5REU2) RecName: Full=60S ribosomal protein L23; &CR857424_1(C... 203 5e-51
CR382130_420(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 203 5e-51
protein update 2009. 3.24
PSORT

psg: 0.65 gvh: -0.08 alm: 0.76 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VSH682 is nuc

5' end seq. ID VSH682F
5' end seq.
>VSH682F.Seq
CATAAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTC
CAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTG
CCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGG
TCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAG
TTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATA
ACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCG
CCAAGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAA
TAAATACACATAAAGTTAAAACAATATAAAAAAAAAA----------
Length of 5' end seq. 457
3' end seq. ID VSH682Z
3' end seq.
>VSH682Z.Seq
----------CATAAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCA
CTCGGTCTTCCAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTA
TACGTCATTGCCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTT
GGTGATATGGTCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGC
ACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTAT
TTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTC
GGACCAGTCGCCAAGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACC
ATTGTTTAAATAAATACACATAAAGTTA
Length of 3' end seq. 438
Connected seq. ID VSH682P
Connected seq.
>VSH682P.Seq
CATAAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTC
CAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTG
CCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGG
TCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAG
TTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATA
ACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCG
CCAAGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAA
TAAATACACATAAAGTTAAAACAATATAAAAAAAAAA----------CATAAATAATGTC
AAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTGT
CATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTAT
CAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCGT
CAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAG
AAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTAT
GTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTC
CGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATAA
AGTTA
Length of connected seq. 895
Full length Seq ID -
Full length Seq. -
Length of full length seq. -