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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH642
Library VS
(Link to library)
Clone ID VSH642
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13431-1
Original site URL
Representative seq. ID VSH642P
(Link to Original site)
Representative DNA sequence 
>VSH642 (VSH642Q) /CSM/VS/VSH6-B/VSH642Q.Seq.d/
CCGAAAAAAACTTTATAGCCTTTAAATAGTAAAAAACTTTCAAACAACATCAAAAATAAA
AAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGGTTTAT
CAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTTAAATT
CATCCACATCAAGTTTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTCATCAA
CTGATGGTGCTTTCATAATGAGAACAACATCTTCTCCATCAATTGATATTCCAAATAGAG
AATCCTCTTACTTTAGAATGCTCCAAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAAXX
XXXXXXXXAAAAAAACTTTATAGCCTTTAAATAGTAAAAAACTTTCAAACAACATCAAAA
ATAAAAAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGG
TTTATCAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTT
AAATTCATCCACATCAAGTNTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTC
ATCAACTGTATGGTGCTTTCATAATGAGAACACACATCTTCTCCATNCAATTGATATTC
sequence update 2001. 3.22
Translated Amino Acid sequence 
pkktl*plnskklsnniknkk*tlsltfsnhhqkipklvyqvqwtq*lnqnqiclhhl*i
hphqvylhhl*ihlhh*ahqlmvls**EQHLLHQLIFQIENPLTLECSKLLKLVHSKKK-
--

---KNFIAFK**ktfkqhqk*kmnsffdlfkspskntktglsssmdsitepksnmsspsl
nsstssxsspslnsspslssstvwcfhnenthllhxidi
Translated Amino Acid sequence (All Frames) 
Frame A:
pkktl*plnskklsnniknkk*tlsltfsnhhqkipklvyqvqwtq*lnqnqiclhhl*i
hphqvylhhl*ihlhh*ahqlmvls**EQHLLHQLIFQIENPLTLECSKLLKLVHSKKK-
--

---kktl*plnskklsnniknkk*tlsltfsnhhqkipklvyqvqwtq*lnqnqiclhhl
*ihphqvylhhl*ihlhh*ahqlygafimrthifsxqlif

Frame B:
rkklysl*ivknfqttskiknelfl*pfqitikkyqnwfikfnglnn*tkikyvftifkf
ihikfiftifkfisiiklin*wcfhnennifsin*ysk*rilll*napsc*swfilkkk-
--

---kklysl*ivknfqttskiknelfl*pfqitikkyqnwfikfnglnn*tkikyvftif
kfihikxiftifkfisiiklincmvls**ehtsspxn*y

Frame C:
eknfiafk**ktfkqhqk*kmnsffdlfkspskntktglsssmdsitepksnmsspslns
stsslsspslnsspslssstdgafimrttsspsidipnressyfrmlqvveagsf*kk--
-

---KNFIAFK**ktfkqhqk*kmnsffdlfkspskntktglsssmdsitepksnmsspsl
nsstssxsspslnsspslssstvwcfhnenthllhxidi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK403 (VSK403Q) /CSM/VS/VSK4-A/VSK403Q.Seq.d/                        565   e-160
VSH642 (VSH642Q) /CSM/VS/VSH6-B/VSH642Q.Seq.d/                        565   e-160
VSH314 (VSH314Q) /CSM/VS/VSH3-A/VSH314Q.Seq.d/                        565   e-160
VSD264 (VSD264Q) /CSM/VS/VSD2-C/VSD264Q.Seq.d/                        565   e-160
SSK341 (SSK341Q) /CSM/SS/SSK3-B/SSK341Q.Seq.d/                        565   e-160
SSC584 (SSC584Q) /CSM/SS/SSC5-D/SSC584Q.Seq.d/                        565   e-160
SSA325 (SSA325Q) /CSM/SS/SSA3-B/SSA325Q.Seq.d/                        565   e-160
SSL245 (SSL245Q) /CSM/SS/SSL2-B/SSL245Q.Seq.d/                        547   e-155
SSD559 (SSD559Q) /CSM/SS/SSD5-C/SSD559Q.Seq.d/                        547   e-155
SSK549 (SSK549Q) /CSM/SS/SSK5-C/SSK549Q.Seq.d/                        541   e-153
own update 2001. 3.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU271130) Dictyostelium discoideum vegetative cDNA clone:VS...   565   e-157  1
(AU267757) Dictyostelium discoideum vegetative cDNA clone:VS...   565   e-157  1
(AU267243) Dictyostelium discoideum vegetative cDNA clone:VS...   565   e-157  1
(AU263740) Dictyostelium discoideum vegetative cDNA clone:VS...   565   e-157  1
(C91488) Dictyostelium discoideum slug cDNA, clone SSK341.        565   e-157  1
(C94213) Dictyostelium discoideum slug cDNA, clone SSK549.        541   e-149  1
(C90641) Dictyostelium discoideum slug cDNA, clone SSI260.        541   e-149  1
(C90444) Dictyostelium discoideum slug cDNA, clone SSI536.        541   e-149  1
(C93274) Dictyostelium discoideum slug cDNA, clone SSM512.        535   e-148  1
(BJ393653) Dictyostelium discoideum cDNA clone:dds32j01, 5' ...   521   e-143  1
dna update 2009. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL929357_40(AL929357|pid:none) Plasmodium falciparum strain 3D7,...    40   0.044
AB113316_1(AB113316|pid:none) Haemaphysalis flava mitochondrial ...    32   0.70
A54138(A54138) acidic repetitive protein arp1 - Tetrahymena ther...    35   1.4
AB276041_1(AB276041|pid:none) Halocynthia roretzi mRNA for HrUra...    34   4.1
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    33   5.3
CP001026_1415(CP001026|pid:none) Burkholderia ambifaria MC40-6 c...    33   5.3
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    33   5.3
CU633453_30(CU633453|pid:none) Podospora anserina genomic DNA ch...    33   5.3
EF154459_4(EF154459|pid:none) Romanomermis culicivorax mitochond...    30   5.4
CP000304_3892(CP000304|pid:none) Pseudomonas stutzeri A1501, com...    33   7.0
protein update 2009. 3.24
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VSH642 is cyt
5' end seq. ID VSH642F
5' end seq. 
>VSH642F.Seq
CCGAAAAAAACTTTATAGCCTTTAAATAGTAAAAAACTTTCAAACAACATCAAAAATAAA
AAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGGTTTAT
CAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTTAAATT
CATCCACATCAAGTTTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTCATCAA
CTGATGGTGCTTTCATAATGAGAACAACATCTTCTCCATCAATTGATATTCCAAATAGAG
AATCCTCTTACTTTAGAATGCTCCAAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAA--
--------
Length of 5' end seq. 358
3' end seq. ID VSH642Z
3' end seq. 
>VSH642Z.Seq
----------AAAAAAACTTTATAGCCTTTAAATAGTAAAAAACTTTCAAACAACATCAA
AAATAAAAAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACT
GGTTTATCAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCT
TTAAATTCATCCACATCAAGTNTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGC
TCATCAACTGTATGGTGCTTTCATAATGAGAACACACATCTTCTCCATNCAATTGATATT
C
Length of 3' end seq. 291
Connected seq. ID VSH642P
Connected seq. 
>VSH642P.Seq
CCGAAAAAAACTTTATAGCCTTTAAATAGTAAAAAACTTTCAAACAACATCAAAAATAAA
AAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGGTTTAT
CAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTTAAATT
CATCCACATCAAGTTTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTCATCAA
CTGATGGTGCTTTCATAATGAGAACAACATCTTCTCCATCAATTGATATTCCAAATAGAG
AATCCTCTTACTTTAGAATGCTCCAAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAA--
--------AAAAAAACTTTATAGCCTTTAAATAGTAAAAAACTTTCAAACAACATCAAAA
ATAAAAAATGAACTCTTTCTTTGACCTTTTCAAATCACCATCAAAAAATACCAAAACTGG
TTTATCAAGTTCAATGGACTCAATAACTGAACCAAAATCAAATATGTCTTCACCATCTTT
AAATTCATCCACATCAAGTNTATCTTCACCATCTTTAAATTCATCTCCATCATTAAGCTC
ATCAACTGTATGGTGCTTTCATAATGAGAACACACATCTTCTCCATNCAATTGATATTC
Length of connected seq. 649
Full length Seq ID -
Full length Seq. -
Length of full length seq. -