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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH417
Library VS
(Link to library)
Clone ID VSH417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11316-1
Original site URL
Representative seq. ID VSH417P
(Link to Original site)
Representative DNA sequence 
>VSH417 (VSH417Q) /CSM/VS/VSH4-A/VSH417Q.Seq.d/
TACAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATTGATGTTGATATTGA
GAGTCAACCATTATTGGGTGGAAAATCAAATTGGAAAAAGGCTCGTAATGTATTCACTCA
AATCAATGTTATCTCTGCATTCCGTAATCAACCAAGATTAAAAAGAACAAAAAGTTTATT
TGCAACAAAATCATCAGATTCAAATGCTAGATATAATAGAAATTTAAATGGTTCAGGTTA
TGGAAGTGGTTCAAGTTAAATAAAATAATTAAAAAAAGAAAAAAAAACCANAAAAAAAAX
XXXXXXXXXACCAATACAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATT
GATGTTGATATTGAGAGTCAACCATTATTGGGTGGAAAATCNAATTGGAAAAAGGCTCGT
AATGTATTCACTCGAATCAATGTTATCTCTGCATTCCGNAATCAAACCAAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
yky*s*tigc*klgn*c*y*estiigwkiklekgs*cihsnqcylcip*stkikknkkfi
cnkiirfkc*i**KFKWFRLWKWFKLNKIIKKRKKNXKK---

---TNTNIEVKPLDVKNLGIDVDIESQPLLGGKSNWKKARNVFTRINVISAFRNQTK
Translated Amino Acid sequence (All Frames) 
Frame A:
yky*s*tigc*klgn*c*y*estiigwkiklekgs*cihsnqcylcip*stkikknkkfi
cnkiirfkc*i**KFKWFRLWKWFKLNKIIKKRKKNXKK---

---TNTNIEVKPLDVKNLGIDVDIESQPLLGGKSNWKKARNVFTRINVISAFRNQTK

Frame B:
tnievkpldvknlgidvdiesqpllggksnwkkarnvftqinvisafrnqprlkrtkslf
atkssdsnarynrnlngsgygsgss*ik*lkkekktxkk---

---piqilklnhwmlktwelmlilrvnhywvenxigkrlvmyslesmlslhsxikp

Frame C:
qilklnhwmlktwelmlilrvnhywvenqigkrlvmyslksmlslhsvinqd*keqkvyl
qqnhqiqmldiiei*mvqvmevvqvk*nn*kkkkkpxkk---

---qyky*s*tigc*klgn*c*y*estiigwkixlekgs*cihsnqcylcipxsnq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH417 (VSH417Q) /CSM/VS/VSH4-A/VSH417Q.Seq.d/                        535   e-151
CHA274 (CHA274Q) /CSM/CH/CHA2-D/CHA274Q.Seq.d/                        460   e-129
CHQ205 (CHQ205Q) /CSM/CH/CHQ2-A/CHQ205Q.Seq.d/                        458   e-128
CHO414 (CHO414Q) /CSM/CH/CHO4-A/CHO414Q.Seq.d/                        438   e-122
SHG252 (SHG252Q) /CSM/SH/SHG2-C/SHG252Q.Seq.d/                        377   e-103
AHF113 (AHF113Q) /CSM/AH/AHF1-A/AHF113Q.Seq.d/                        373   e-102
CHI604 (CHI604Q) /CSM/CH/CHI6-A/CHI604Q.Seq.d/                        214   9e-55
SLC579 (SLC579Q) /CSM/SL/SLC5-D/SLC579Q.Seq.d/                         36   0.46
SLA368 (SLA368Q) /CSM/SL/SLA3-C/SLA368Q.Seq.d/                         36   0.46
CHO629 (CHO629Q) /CSM/CH/CHO6-B/CHO629Q.Seq.d/                         36   0.46
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267415) Dictyostelium discoideum vegetative cDNA clone:VS...   535   e-148  1
(BJ385180) Dictyostelium discoideum cDNA clone:ddc54i02, 3' ...   444   e-123  2
(BJ377147) Dictyostelium discoideum cDNA clone:ddc22c20, 3' ...   452   e-123  1
(BJ384628) Dictyostelium discoideum cDNA clone:ddc50l04, 3' ...   240   e-115  2
(BJ350811) Dictyostelium discoideum cDNA clone:dda41i03, 3' ...   200   5e-96  4
(BJ406824) Dictyostelium discoideum cDNA clone:dds36g14, 3' ...   210   2e-94  3
(AU267416) Dictyostelium discoideum vegetative cDNA clone:VS...   309   5e-80  1
(BJ380716) Dictyostelium discoideum cDNA clone:ddc39g02, 3' ...   214   2e-51  1
(ET109862) QM0AAC18AB01FM1 CCH3 Citrus clementina genomic cl...    50   0.076  1
(ET107592) QM0AAC14CA03RM2 CCH3 Citrus clementina genomic cl...    50   0.076  1
dna update 2009. 6.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP004267_8(AP004267|pid:none) Oryza sativa Japonica Group genomi...    32   5.0
protein update 2009. 3.23
PSORT 

 psg: 0.67  gvh: 0.28  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSH417 is nuc
5' end seq. ID VSH417F
5' end seq. 
>VSH417F.Seq
TACAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATTGATGTTGATATTGA
GAGTCAACCATTATTGGGTGGAAAATCAAATTGGAAAAAGGCTCGTAATGTATTCACTCA
AATCAATGTTATCTCTGCATTCCGTAATCAACCAAGATTAAAAAGAACAAAAAGTTTATT
TGCAACAAAATCATCAGATTCAAATGCTAGATATAATAGAAATTTAAATGGTTCAGGTTA
TGGAAGTGGTTCAAGTTAAATAAAATAATTAAAAAAAGAAAAAAAAACCANAAAAAAAA-
---------
Length of 5' end seq. 299
3' end seq. ID VSH417Z
3' end seq. 
>VSH417Z.Seq
----------ACCAATACAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAAT
TGATGTTGATATTGAGAGTCAACCATTATTGGGTGGAAAATCNAATTGGAAAAAGGCTCG
TAATGTATTCACTCGAATCAATGTTATCTCTGCATTCCGNAATCAAACCAAG
Length of 3' end seq. 162
Connected seq. ID VSH417P
Connected seq. 
>VSH417P.Seq
TACAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATTGATGTTGATATTGA
GAGTCAACCATTATTGGGTGGAAAATCAAATTGGAAAAAGGCTCGTAATGTATTCACTCA
AATCAATGTTATCTCTGCATTCCGTAATCAACCAAGATTAAAAAGAACAAAAAGTTTATT
TGCAACAAAATCATCAGATTCAAATGCTAGATATAATAGAAATTTAAATGGTTCAGGTTA
TGGAAGTGGTTCAAGTTAAATAAAATAATTAAAAAAAGAAAAAAAAACCANAAAAAAAA-
---------ACCAATACAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATT
GATGTTGATATTGAGAGTCAACCATTATTGGGTGGAAAATCNAATTGGAAAAAGGCTCGT
AATGTATTCACTCGAATCAATGTTATCTCTGCATTCCGNAATCAAACCAAG
Length of connected seq. 461
Full length Seq ID -
Full length Seq. -
Length of full length seq. -