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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH364
Library VS
(Link to library)
Clone ID VSH364
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16491-1
Original site URL
Representative seq. ID VSH364P
(Link to Original site)
Representative DNA sequence 
>VSH364 (VSH364Q) /CSM/VS/VSH3-C/VSH364Q.Seq.d/
CCTCAGNACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCAC
CTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAAAGAACTGAAGAAACCAC
CACCACCGCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAAAATATATAAAAAAAAAA
XXXXXXXXXXCCTCAAGACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTT
CATCTGCCACCTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAAAGAACTG
AAGAAACCACCACCACCGTCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAAAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
sxlqklmllnylnsmlhlppqpspqlkk*vpllkelkkpppplkkk*NNSLFLKIYKKK-
--

---LKTPKVDAAKLSELYASSATSTIAPTEEVGTAVERTEETTTTVLKKNKIIPYF*k
Translated Amino Acid sequence (All Frames) 
Frame A:
pqxsks*cc*ii*tlcfichlnhrpn*rsryrc*kn*rnhhhrlkknkiipyf*kyikkk
---

---pqdsks*cc*ii*tlcfichlnhrpn*rsryrc*kn*rnhhhrlkkk*nnslflki

Frame B:
lxtpkvdaaklselyassatstiapteevgtaverteetttta*kkik*flifkni*kk-
--

---LKTPKVDAAKLSELYASSATSTIAPTEEVGTAVERTEETTTTVLKKNKIIPYF*k

Frame C:
sxlqklmllnylnsmlhlppqpspqlkk*vpllkelkkpppplkkk*NNSLFLKIYKKK-
--

---srlqklmllnylnsmlhlppqpspqlkk*vpllkelkkpppps*kkik*flifkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH364 (VSH364Q) /CSM/VS/VSH3-C/VSH364Q.Seq.d/                        280   1e-74
VSC789 (VSC789Q) /CSM/VS/VSC7-D/VSC789Q.Seq.d/                        264   8e-70
VSC455 (VSC455Q) /CSM/VS/VSC4-C/VSC455Q.Seq.d/                        264   8e-70
VSB383 (VSB383Q) /CSM/VS/VSB3-D/VSB383Q.Seq.d/                        264   8e-70
SLB619 (SLB619Q) /CSM/SL/SLB6-A/SLB619Q.Seq.d/                        264   8e-70
SLB607 (SLB607Q) /CSM/SL/SLB6-A/SLB607Q.Seq.d/                        264   8e-70
FC-BS17 (FC-BS17Q) /CSM/FC/FC-BS/FC-BS17Q.Seq.d/                      264   8e-70
FC-BQ08 (FC-BQ08Q) /CSM/FC/FC-BQ/FC-BQ08Q.Seq.d/                      264   8e-70
FC-BO17 (FC-BO17Q) /CSM/FC/FC-BO/FC-BO17Q.Seq.d/                      264   8e-70
FC-BA16 (FC-BA16Q) /CSM/FC/FC-BA/FC-BA16Q.Seq.d/                      264   8e-70
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267333) Dictyostelium discoideum vegetative cDNA clone:VS...   262   9e-76  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   254   2e-73  2
(AU284312) Dictyostelium discoideum gamete cDNA clone:FC-AK1...   254   2e-73  2
(C23652) Dictyostelium discoideum gamete cDNA, clone FC-AG13.     254   2e-73  2
(AU284996) Dictyostelium discoideum gamete cDNA clone:FC-BS1...   254   2e-73  2
(AU284930) Dictyostelium discoideum gamete cDNA clone:FC-BQ0...   254   2e-73  2
(AU284889) Dictyostelium discoideum gamete cDNA clone:FC-BO1...   254   2e-73  2
(C92427) Dictyostelium discoideum slug cDNA, clone SSE533.        254   2e-73  2
(AU284467) Dictyostelium discoideum gamete cDNA clone:FC-AX1...   254   2e-73  2
(C23759) Dictyostelium discoideum gamete cDNA, clone FC-AF09.     254   2e-73  2
dna update 2009. 6.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZW5) RecName: Full=40S ribosomal protein S3a;                      50   2e-05
AC116977_69(AC116977|pid:none) Dictyostelium discoideum chromoso...    50   2e-05
protein update 2009. 3.23
PSORT 

 psg: 0.45  gvh: 0.39  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for VSH364 is nuc
5' end seq. ID VSH364F
5' end seq. 
>VSH364F.Seq
CCTCAGNACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCAC
CTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAAAGAACTGAAGAAACCAC
CACCACCGCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAAAATATATAAAAAAAAAA
----------
Length of 5' end seq. 180
3' end seq. ID VSH364Z
3' end seq. 
>VSH364Z.Seq
----------CCTCAAGACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTT
CATCTGCCACCTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAAAGAACTG
AAGAAACCACCACCACCGTCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAAAATA
Length of 3' end seq. 168
Connected seq. ID VSH364P
Connected seq. 
>VSH364P.Seq
CCTCAGNACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCAC
CTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAAAGAACTGAAGAAACCAC
CACCACCGCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAAAATATATAAAAAAAAAA
----------CCTCAAGACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTT
CATCTGCCACCTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAAAGAACTG
AAGAAACCACCACCACCGTCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAAAATA
Length of connected seq. 348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -