NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH343
Library VS
(Link to library)
Clone ID VSH343
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09803-1
Original site URL
Representative seq. ID VSH343P
(Link to Original site)
Representative DNA sequence 
>VSH343 (VSH343Q) /CSM/VS/VSH3-B/VSH343Q.Seq.d/
CGCGTCCGATTTATTTATATATTTATTTATTATATATACACACCTTTTTTTTACTTATTT
ATTAAACTATTTTATTATTAAAAAGATTATTAAAATAAAATATAATATAATTTTTTAATA
ATTTAAGAAACTCAAAAAAAAAAAACCCCAAAAAAAAAAXXXXXXXXXXCGAAGGTGAGA
AACACTCTCAAGAGGAATTGGTCAAACAAAAGAAGGATCTCGAAGATGCTCTCAACAAAA
TCAGAGAACAAAATGATAATAGAAACTCTCGTATCACCGATCTCCAATCAAAGATTGACG
ATGCCCTTCGTGGTCTCGATGATGAGAAATTGGCTAAACTCGATCTCGAATCTCGTCTTG
CCAAATGTGAAAAAGATAAAGCTATCCTCGAATTAAAACTCGCTGAAATCCTCGACGAAA
AAGATAGACTCGAAAAGAAAATCGATGAAGATAAAAAGAGAGCTGAAGCTGAACGTTTGG
GTCTCGGTTTAATTNGTCAACATCTCGCTGCTCAATTCTCTGATATTCATTAAAGCCNAT
CCTNTNTGGNACATCCAGG
sequence update 2001. 3.22
Translated Amino Acid sequence 
rpiylyiyllyihtfflliy*tilllkrllk*nii*FFNNLRNSKKKNPKKK---

---EGEKHSQEELVKQKKDLEDALNKIREQNDNRNSRITDLQSKIDDALRGLDDEKLAKL
DLESRLAKCEKDKAILELKLAEILDEKDRLEKKIDEDKKRAEAERLGLGLIXQHLAAQFS
DIH*sxsxxxhp
Translated Amino Acid sequence (All Frames) 
Frame A:
rvrfiyifiyyiytpffylfiklfyy*kdy*nki*ynflii*etqkkktpkkk---

---rr*etlsrgigqtkegsrrcsqqnqrtk***klsyhrspikd*rcpswsr**eig*t
rsrisscqm*kr*sypriktr*nprrkr*trkenr*r*kes*s*tfgsrfnxstsrcsil
*yslkpilxgtsr

Frame B:
asdlfiylfiiythlfftyllnyfiikkiikikyniif**fkklkkkkpqkk---

---EGEKHSQEELVKQKKDLEDALNKIREQNDNRNSRITDLQSKIDDALRGLDDEKLAKL
DLESRLAKCEKDKAILELKLAEILDEKDRLEKKIDEDKKRAEAERLGLGLIXQHLAAQFS
DIH*sxsxxxhp

Frame C:
rpiylyiyllyihtfflliy*tilllkrllk*nii*FFNNLRNSKKKNPKKK---

---kvrntlkrnwsnkrriskmlstksenkmiietlvspisnqrltmpfvvsmmrnwlns
isnlvlpnvkkiklssn*nslksstkkidskrksmkikrelklnvwvsv*xvnisllnsl
ifikaxpxwxiq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH343 (VSH343Q) /CSM/VS/VSH3-B/VSH343Q.Seq.d/                        743   0.0
VSH485 (VSH485Q) /CSM/VS/VSH4-D/VSH485Q.Seq.d/                        718   0.0
VFK648 (VFK648Q) /CSM/VF/VFK6-B/VFK648Q.Seq.d/                        718   0.0
SSJ769 (SSJ769Q) /CSM/SS/SSJ7-C/SSJ769Q.Seq.d/                        718   0.0
SFF534 (SFF534Q) /CSM/SF/SFF5-B/SFF534Q.Seq.d/                        718   0.0
AFF119 (AFF119Q) /CSM/AF/AFF1-A/AFF119Q.Seq.d/                        718   0.0
VSC851 (VSC851Q) /CSM/VS/VSC8-C/VSC851Q.Seq.d/                        714   0.0
VFA317 (VFA317Q) /CSM/VF/VFA3-A/VFA317Q.Seq.d/                        714   0.0
VSD547 (VSD547Q) /CSM/VS/VSD5-B/VSD547Q.Seq.d/                        702   0.0
SSL735 (SSL735Q) /CSM/SS/SSL7-B/SSL735Q.Seq.d/                        694   0.0
own update 2001.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267297) Dictyostelium discoideum vegetative cDNA clone:VS...   446   e-164  2
(AU267523) Dictyostelium discoideum vegetative cDNA clone:VS...   446   e-157  2
(BJ398389) Dictyostelium discoideum cDNA clone:dds12c09, 3' ...   446   e-156  2
(C91173) Dictyostelium discoideum slug cDNA, clone SSJ769.        446   e-156  2
(BJ433629) Dictyostelium discoideum cDNA clone:ddv22o12, 3' ...   446   e-156  2
(BJ339943) Dictyostelium discoideum cDNA clone:dda11e05, 3' ...   446   e-156  2
(L46371) Dictyostelium discoideum cortexillin II mRNA, compl...   446   e-156  2
(AU262838) Dictyostelium discoideum vegetative cDNA clone:VS...   442   e-155  2
(BJ428721) Dictyostelium discoideum cDNA clone:ddv1b05, 3' e...   440   e-155  2
(AC115581) Dictyostelium discoideum chromosome 2 map complem...   446   e-155  2
dna update 2009. 6.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Y0T4) RecName: Full=Cortexillin-1; AltName: Full=Cortexillin ...    91   3e-17
AJ133440_3(AJ133440|pid:none) Streptococcus dysgalactiae subsp. ...    43   0.006
AK173148_1(AK173148|pid:none) Mus musculus mRNA for mKIAA1319 pr...    42   0.008
BC064474_1(BC064474|pid:none) Mus musculus cingulin, mRNA (cDNA ...    41   0.023
(P42636) Tropomyosin-1 (TMI) (Bg 39).  &A33085(A33085) &M85199_1...    41   0.023
(P43689) Tropomyosin-2 (TMII).  &M97554_1(M97554|pid:none)             40   0.030
CP001283_3162(CP001283|pid:none) Bacillus cereus AH820, complete...    39   0.087
AE017355_2969(AE017355|pid:none) Bacillus thuringiensis serovar ...    39   0.087
CP001186_3158(CP001186|pid:none) Bacillus cereus G9842, complete...    39   0.087
CP000227_2950(CP000227|pid:none) Bacillus cereus Q1, complete ge...    39   0.087
protein update 2009. 3.23
PSORT 

 psg: 0.27  gvh: 0.02  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.27  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSH343 is nuc
5' end seq. ID VSH343F
5' end seq. 
>VSH343F.Seq
CGCGTCCGATTTATTTATATATTTATTTATTATATATACACACCTTTTTTTTACTTATTT
ATTAAACTATTTTATTATTAAAAAGATTATTAAAATAAAATATAATATAATTTTTTAATA
ATTTAAGAAACTCAAAAAAAAAAAACCCCAAAAAAAAAA----------
Length of 5' end seq. 159
3' end seq. ID VSH343Z
3' end seq. 
>VSH343Z.Seq
----------CGAAGGTGAGAAACACTCTCAAGAGGAATTGGTCAAACAAAAGAAGGATC
TCGAAGATGCTCTCAACAAAATCAGAGAACAAAATGATAATAGAAACTCTCGTATCACCG
ATCTCCAATCAAAGATTGACGATGCCCTTCGTGGTCTCGATGATGAGAAATTGGCTAAAC
TCGATCTCGAATCTCGTCTTGCCAAATGTGAAAAAGATAAAGCTATCCTCGAATTAAAAC
TCGCTGAAATCCTCGACGAAAAAGATAGACTCGAAAAGAAAATCGATGAAGATAAAAAGA
GAGCTGAAGCTGAACGTTTGGGTCTCGGTTTAATTNGTCAACATCTCGCTGCTCAATTCT
CTGATATTCATTAAAGCCNATCCTNTNTGGNACATCCAGG
Length of 3' end seq. 390
Connected seq. ID VSH343P
Connected seq. 
>VSH343P.Seq
CGCGTCCGATTTATTTATATATTTATTTATTATATATACACACCTTTTTTTTACTTATTT
ATTAAACTATTTTATTATTAAAAAGATTATTAAAATAAAATATAATATAATTTTTTAATA
ATTTAAGAAACTCAAAAAAAAAAAACCCCAAAAAAAAAA----------CGAAGGTGAGA
AACACTCTCAAGAGGAATTGGTCAAACAAAAGAAGGATCTCGAAGATGCTCTCAACAAAA
TCAGAGAACAAAATGATAATAGAAACTCTCGTATCACCGATCTCCAATCAAAGATTGACG
ATGCCCTTCGTGGTCTCGATGATGAGAAATTGGCTAAACTCGATCTCGAATCTCGTCTTG
CCAAATGTGAAAAAGATAAAGCTATCCTCGAATTAAAACTCGCTGAAATCCTCGACGAAA
AAGATAGACTCGAAAAGAAAATCGATGAAGATAAAAAGAGAGCTGAAGCTGAACGTTTGG
GTCTCGGTTTAATTNGTCAACATCTCGCTGCTCAATTCTCTGATATTCATTAAAGCCNAT
CCTNTNTGGNACATCCAGG
Length of connected seq. 549
Full length Seq ID -
Full length Seq. -
Length of full length seq. -