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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH338
Library VS
(Link to library)
Clone ID VSH338
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH338Z
(Link to Original site)
Representative DNA sequence 
>VSH338 (VSH338Q) /CSM/VS/VSH3-B/VSH338Q.Seq.d/
XXXXXXXXXXAACAAACCTTGTAATAATACGA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---TNLVIIR
Translated Amino Acid sequence (All Frames) 
Frame A:
---TNLVIIR


Frame B:
---qtl**y


Frame C:
---kpcnnt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH338 (VSH338Q) /CSM/VS/VSH3-B/VSH338Q.Seq.d/                         44   7e-05
VHQ344 (VHQ344Q) /CSM/VH/VHQ3-B/VHQ344Q.Seq.d/                         32   0.27
VHP312 (VHP312Q) /CSM/VH/VHP3-A/VHP312Q.Seq.d/                         32   0.27
VHO860 (VHO860Q) /CSM/VH/VHO8-C/VHO860Q.Seq.d/                         32   0.27
VHO425 (VHO425Q) /CSM/VH/VHO4-B/VHO425Q.Seq.d/                         32   0.27
VHN504 (VHN504Q) /CSM/VH/VHN5-A/VHN504Q.Seq.d/                         32   0.27
VHM323 (VHM323Q) /CSM/VH/VHM3-A/VHM323Q.Seq.d/                         32   0.27
VHL420 (VHL420Q) /CSM/VH/VHL4-A/VHL420Q.Seq.d/                         32   0.27
VHK871 (VHK871Q) /CSM/VH/VHK8-C/VHK871Q.Seq.d/                         32   0.27
VHK687 (VHK687Q) /CSM/VH/VHK6-D/VHK687Q.Seq.d/                         32   0.27
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP000368|AP000368.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6B6.    36  10.0  1
AC116404|AC116404.6 Mus musculus clone RP23-143M9, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    36  10.0  1
BX571981|BX571981.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-31J3.    36  10.0  1
BH904317|BH904317.1 SALK_104299.55.45.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_104299.55.45.x, DNA sequence.    36  10.0  1
dna update 2003. 8.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 28,628,199
protein update 2009. 3.23
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSH338Z
3' end seq. 
>VSH338Z.Seq
----------AACAAACCTTGTAATAATACGA
Length of 3' end seq. 22
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -