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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH329
Library VS
(Link to library)
Clone ID VSH329
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15105-1
Original site URL
Representative seq. ID VSH329E
(Link to Original site)
Representative DNA sequence 
>VSH329 (VSH329Q) /CSM/VS/VSH3-B/VSH329Q.Seq.d/
CGCGTCCGGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGT
CCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCA
GCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTT
GCCAACTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCAT
CGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGT
CGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTAC
TGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCT
CTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTT
AGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAA
GGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATT
ATTGTTTCTTTTTAAAACCCCACAAGAAATAAACTATATAAAAAAAAAGNAAAATATAAA
TTAAAGTAAAATGTTTTTTTAAAAAG
sequence update 2001. 3.25
Translated Amino Acid sequence 
ASGLVKLHYLVNGHTLALLVQISPYKITSALKRMSSLHIQQVDTTKLDSERPNAQLLNVL
PTMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGT
VRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQK
DALERTAKSHR*airiyyillflfktpqeinyikkkxnin*skmff*k
Translated Amino Acid sequence (All Frames) 
Frame A:
rvrtsevalfgkwsysgvtcpdislqdyicvkknvftphsagrynkvrfrkaqcpiverl
anyddvr*kcw*kshgcpyhrtslrnhlplnr*eptpsfsrschelwst*rfnsywfswy
cqtsscrcfpnetcqprclplnpryscccfqkhqncc*mfs**inqclkrftkfllnqtk
gcfrtyrqipslsdsnilyiivsf*nptrnklykkkxkyklk*nvflk


Frame B:
ASGLVKLHYLVNGHTLALLVQISPYKITSALKRMSSLHIQQVDTTKLDSERPNAQLLNVL
PTMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGT
VRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQK
DALERTAKSHR*airiyyillflfktpqeinyikkkxnin*skmff*k


Frame C:
rpd**sciiw*mvilwrylsrylltrlhlr*keclhstfsr*iqqs*iqkgpmpnc*tsc
ql**csvemlvkkswlsvssnkpskssts*pirthskf*skls*tlvhvkiqlvlvqlvl
sdvklsmfpq*dvsttlfts*pkvlvlllsetselllnv*lmn*smpqkvhqiptqsnkr
ml*nvppnpivkrfeyiiyycfflkphkk*ti*kkxki*ikvkcffkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH329 (VSH329Q) /CSM/VS/VSH3-B/VSH329Q.Seq.d/                       1275   0.0
VSH720 (VSH720Q) /CSM/VS/VSH7-A/VSH720Q.Seq.d/                       1233   0.0
VSE854 (VSE854Q) /CSM/VS/VSE8-C/VSE854Q.Seq.d/                       1233   0.0
VSF223 (VSF223Q) /CSM/VS/VSF2-A/VSF223Q.Seq.d/                       1227   0.0
VSJ269 (VSJ269Q) /CSM/VS/VSJ2-C/VSJ269Q.Seq.d/                       1223   0.0
VSI164 (VSI164Q) /CSM/VS/VSI1-C/VSI164Q.Seq.d/                       1223   0.0
FC-BS16 (FC-BS16Q) /CSM/FC/FC-BS/FC-BS16Q.Seq.d/                     1219   0.0
VSK446 (VSK446Q) /CSM/VS/VSK4-B/VSK446Q.Seq.d/                       1213   0.0
FC-078 (FC-078Q) /CSM/CG/CG-FC/FC-078Q.Seq.d/                        1211   0.0
FC-AD21 (FC-AD21Q) /CSM/FC/FC-AD/FC-AD21Q.Seq.d/                     1207   0.0
own update 2001.11.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267272) Dictyostelium discoideum vegetative cDNA clone:VS...  1217   0.0    1
(AU267271) Dictyostelium discoideum vegetative cDNA clone:VS...  1181   0.0    1
(AU284995) Dictyostelium discoideum gamete cDNA clone:FC-BS1...   872   0.0    2
(AU284552) Dictyostelium discoideum gamete cDNA clone:FC-BC1...   872   0.0    2
(AU269148) Dictyostelium discoideum vegetative cDNA clone:VS...   872   0.0    2
(AU267868) Dictyostelium discoideum vegetative cDNA clone:VS...   872   0.0    2
(AU263430) Dictyostelium discoideum vegetative cDNA clone:VS...   872   0.0    2
(AU263359) Dictyostelium discoideum vegetative cDNA clone:VS...   872   0.0    3
(C89933) Dictyostelium discoideum slug cDNA, clone SSG639.        872   0.0    2
(C23681) Dictyostelium discoideum gamete cDNA, clone FC-AD21.     872   0.0    2
dna update 2009. 6. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MA6) RecName: Full=40S ribosomal protein S5;                      251   6e-97
AY961565_1(AY961565|pid:none) Lysiphlebus testaceipes ribosomal ...   196   5e-66
AY891473_1(AY891473|pid:none) Synthetic construct Homo sapiens c...   197   5e-66
AK002235_1(AK002235|pid:none) Mus musculus adult male kidney cDN...   197   5e-66
(P46782) RecName: Full=40S ribosomal protein S5;  &(Q5E988) RecN...   197   5e-66
AY961522_1(AY961522|pid:none) Lysiphlebus testaceipes ribosomal ...   196   7e-66
AB291558_1(AB291558|pid:none) Solea senegalensis rpS5 mRNA for r...   197   7e-66
AF402813_1(AF402813|pid:none) Ictalurus punctatus 40S ribosomal ...   197   7e-66
BC054263_1(BC054263|pid:none) Xenopus laevis hypothetical protei...   195   1e-65
FJ196315_1(FJ196315|pid:none) Auxenochlorella protothecoides rib...   191   2e-65
protein update 2009. 3.23
PSORT 

 psg: 0.89  gvh: 0.43  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.34  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSH329 is cyt
5' end seq. ID VSH329F
5' end seq. 
>VSH329F.Seq
CGCGTCCGGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGT
CCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCA
GCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTT
GCCAACTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCAT
CGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGT
CGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTAC
TGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCT
CTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTT
AGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAA
GGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATA----
------
Length of 5' end seq. 596
3' end seq. ID VSH329Z
3' end seq. 
>VSH329Z.Seq
----------AGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGTCC
AGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGC
AGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGC
CAACTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCG
AACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCG
AAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTG
TCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCTCT
TAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAG
CTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAAGG
ATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTAT
TGTTTCTTTTTAAAACCCCACAAGAAATAAACTATATAAAAAAAAAGNAAAATATAAATT
AAAGTAAAATGTTTTTTTAAAAAG
Length of 3' end seq. 674
Connected seq. ID VSH329P
Connected seq. 
>VSH329P.Seq
CGCGTCCGGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGT
CCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCA
GCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTT
GCCAACTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCAT
CGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGT
CGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTAC
TGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCT
CTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTT
AGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAA
GGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATA----
------AGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGTCCAGAT
ATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGCAGGT
AGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGCCAAC
TATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCGAACA
AGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCGAAGC
TGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTGTCAG
ACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCTCTTAAC
CCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAGCTGA
TGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAAGGATGC
TTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTATTGTT
TCTTTTTAAAACCCCACAAGAAATAAACTATATAAAAAAAAAGNAAAATATAAATTAAAG
TAAAATGTTTTTTTAAAAAG
Length of connected seq. 1270
Full length Seq ID VSH329E
Full length Seq. 
>VSH329E.Seq
CGCGTCCGGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGT
CCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCA
GCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTT
GCCAACTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCAT
CGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGT
CGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTAC
TGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCT
CTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTT
AGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAA
GGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATT
ATTGTTTCTTTTTAAAACCCCACAAGAAATAAACTATATAAAAAAAAAGNAAAATATAAA
TTAAAGTAAAATGTTTTTTTAAAAAG
Length of full length seq. 686