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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH322
Library VS
(Link to library)
Clone ID VSH322
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11840-1
Original site URL
Representative seq. ID VSH322P
(Link to Original site)
Representative DNA sequence 
>VSH322 (VSH322Q) /CSM/VS/VSH3-A/VSH322Q.Seq.d/
TAAATATTTTGCACTTGAAGTTGGACGAAAAAAATTAAAAGTTCAAGTAAGGGTACCGAA
AAGGAAAGAATTAACGCTTGATGTAATGATGGCAAGATCAAAAAAACGTCGAGGACGTCA
GCGTAACGGATTAAAAGTAGTACGTAACTTTTAACGTATAGCTTACTATTTAGGTTTAAA
CCGGTAAAAGGTGGATAATGAGAGTTTATCTACAACAAATTACTGCACATGGAGGAAAAA
GCAAGCCTTAAGAATAACATATCGGAAGTAGAGCAGATAAAAAATGATGGAGCACATAAA
AAGGTTATTTACGAAGAAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCA
CAAAAGAGCCGAAAAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTT
CGAAAATTTATTTAGGCAAAATGTGAGAAGTXXXXXXXXXXCTTTAAGTAGTTTNATAGG
GGGATTAGTAATATGGGACGATAAGTATAATATTTGATAGTTTATATGATCACCAACATA
CATATGAAGTAAAAAGAGGATTAGTAATGGGAATGATGATGTTTATCATTTCAGAAGTAA
TGTTTTTCTTTTCATTTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAA
TAGGATGTGTATGGCCACCATATGGATTAACAGTATATTCATATATGGGATTACCATTAT
TAAATACAGTATTATTATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAA
CCGAACAAAAAGCGGTACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTA
AAAATTTAATGAATTTATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATG
AAAGAAGAGACAAATTTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAA
AATTAATAGCAATATCAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATT
TTTTTGAAAACCCAGAAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAA
TAGAATATGCATTAATAACAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
kyfalevgrkklkvqvrvpkrkeltldvmmarskkrrgrqrnglkvvrnf*riayylgln
r*kvdneslsttnyctwrkkqalrityrk*sr*kmmehikrlftkkgnmrpshi*kksih
kraekrskhi*RKKEMKGFFENLFRQNVRS---

---LSSXIGGLVIWDDKYNI**fi*sptyi*skkrisngnddvyhfrsnvflfiflvifl
yqfitkysnrmcmatiwinsifiygitiikysiiitiwsninrwlyninrtksgt*kerk
sissrrsi*kfnefi*nkkqykyinlcr*kkrqifwkrk*trgqdcrtkinsnisrskri
krfrlgfiff*kprkyrakl*rtnklirnricinnn
Translated Amino Acid sequence (All Frames) 
Frame A:
*ifct*swtkkikssskgtekerina*cndgkikktsrtsa*riksst*lltysllfrfk
pvkgg**efiynkllhmeekaslknniseveqikndgahkkviyeegkyatepyleekhp
qksrkke*thlakkgnerifrkfi*akcek---

---l*vvx*gd**ygtisiifdslydhqhtyevkrglvmgmmmfiisevmfffsffwsyf
yislspniaigcvwppygltvysymglpllntvllllsgailtdgytilteqkavhekne
kvlaveeafknlmnlyktknsintltfvderrdkffgkesrqedkiaeqkliaisagvke
lrdldwdlyffenpeniepnykeptnlsvieyalit

Frame B:
kyfalevgrkklkvqvrvpkrkeltldvmmarskkrrgrqrnglkvvrnf*riayylgln
r*kvdneslsttnyctwrkkqalrityrk*sr*kmmehikrlftkkgnmrpshi*kksih
kraekrskhi*RKKEMKGFFENLFRQNVRS---

---fk*fxrgisnmgr*v*ylivymitnihmk*ked**we**clsfqk*cfsfhffghif
isvyhqi*q*dvyghhmd*qyihiwdyhy*iqyyyyyleqy*qmviqy*pnkkrymkrtk
ky*q*kkhlki**iyikqktv*ih*pl*mkeetnflekkvdkrtrlqnkn**qyqqe*kn
*ei*igiyiflktqki*sqiiknqqtyp**nmh**q

Frame C:
nilhlkldekn*kfk*gyrkgkn*rlm**wqdqknvedvsvtd*k*yvtfnv*lti*v*t
gkrwimrvylqqitahggkskp*e*higsradkk*wst*kgylrrreicdraifrrkast
kepkkgvntfsekrk*kdfskiylgkm*e---

---LSSXIGGLVIWDDKYNI**fi*sptyi*skkrisngnddvyhfrsnvflfiflvifl
yqfitkysnrmcmatiwinsifiygitiikysiiitiwsninrwlyninrtksgt*kerk
sissrrsi*kfnefi*nkkqykyinlcr*kkrqifwkrk*trgqdcrtkinsnisrskri
krfrlgfiff*kprkyrakl*rtnklirnricinnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH322 (VSH322Q) /CSM/VS/VSH3-A/VSH322Q.Seq.d/                       1045   0.0
VSE831 (VSE831Q) /CSM/VS/VSE8-B/VSE831Q.Seq.d/                        888   0.0
SLE524 (SLE524Q) /CSM/SL/SLE5-A/SLE524Q.Seq.d/                        888   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               888   0.0
VSH272 (VSH272Q) /CSM/VS/VSH2-C/VSH272Q.Seq.d/                        880   0.0
SLE259 (SLE259Q) /CSM/SL/SLE2-C/SLE259Q.Seq.d/                        880   0.0
VFC894 (VFC894Q) /CSM/VF/VFC8-D/VFC894Q.Seq.d/                        858   0.0
CFH182 (CFH182Q) /CSM/CF/CFH1-D/CFH182Q.Seq.d/                        858   0.0
CFK269 (CFK269Q) /CSM/CF/CFK2-C/CFK269Q.Seq.d/                        811   0.0
VSA536 (VSA536Q) /CSM/VS/VSA5-B/VSA536Q.Seq.d/                        771   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D16579) Dictyostelium discoideum mitochondrial genes for Gl...   763   0.0    4
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   763   0.0    4
(AU267259) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    3
(AU263411) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    5
(AU035032) Dictyostelium discoideum slug cDNA, clone SLE524.      763   0.0    4
(BJ373110) Dictyostelium discoideum cDNA clone:ddc15c21, 3' ...   763   0.0    4
(AU267176) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    3
(BJ430337) Dictyostelium discoideum cDNA clone:ddv6l24, 3' e...   763   0.0    5
(AU034739) Dictyostelium discoideum slug cDNA, clone SLE259.      755   0.0    2
(AU261546) Dictyostelium discoideum vegetative cDNA clone:VS...   488   0.0    3
dna update 2009. 6. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU275726_4(EU275726|pid:none) Polysphondylium pallidum strain PN...   114   6e-24
AY700145_33(AY700145|pid:none) Polysphondylium pallidum mitochon...   113   1e-23
EU275727_5(EU275727|pid:none) Dictyostelium fasciculatum strain ...   104   6e-21
AF002156_1(AF002156|pid:none) Nematoloma aurantiaca cytochrome o...    44   0.012
AY863211_13(AY863211|pid:none) Mortierella verticillata mitochon...    44   0.012
(P48891) RecName: Full=Cytochrome c oxidase subunit 3;          ...    43   0.016
AJ493124_6(AJ493124|pid:none) Varroa destructor complete mitocho...    43   0.021
AY163547_6(AY163547|pid:none) Varroa destructor mitochondrion, c...    43   0.021
AF084526_1(AF084526|pid:none) Physarum polycephalum cytochrome o...    43   0.021
AF002160_1(AF002160|pid:none) Russula rosacea cytochrome oxidase...    42   0.028
protein update 2009. 3.23
PSORT 

 psg: 0.45  gvh: 0.36  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSH322 is cyt
5' end seq. ID VSH322F
5' end seq. 
>VSH322F.Seq
TAAATATTTTGCACTTGAAGTTGGACGAAAAAAATTAAAAGTTCAAGTAAGGGTACCGAA
AAGGAAAGAATTAACGCTTGATGTAATGATGGCAAGATCAAAAAAACGTCGAGGACGTCA
GCGTAACGGATTAAAAGTAGTACGTAACTTTTAACGTATAGCTTACTATTTAGGTTTAAA
CCGGTAAAAGGTGGATAATGAGAGTTTATCTACAACAAATTACTGCACATGGAGGAAAAA
GCAAGCCTTAAGAATAACATATCGGAAGTAGAGCAGATAAAAAATGATGGAGCACATAAA
AAGGTTATTTACGAAGAAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCA
CAAAAGAGCCGAAAAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTT
CGAAAATTTATTTAGGCAAAATGTGAGAAGT----------
Length of 5' end seq. 451
3' end seq. ID VSH322Z
3' end seq. 
>VSH322Z.Seq
----------CTTTAAGTAGTTTNATAGGGGGATTAGTAATATGGGACGATAAGTATAAT
ATTTGATAGTTTATATGATCACCAACATACATATGAAGTAAAAAGAGGATTAGTAATGGG
AATGATGATGTTTATCATTTCAGAAGTAATGTTTTTCTTTTCATTTTTTTGGTCATATTT
TTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGCCACCATATGGATTAAC
AGTATATTCATATATGGGATTACCATTATTAAATACAGTATTATTATTACTATCTGGAGC
AATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGGTACATGAAAAGAACGA
AAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATTTATATAAAACAAAAAA
CAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAATTTTTTGGAAAAGAAAG
TAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATATCAGCAGGAGTAAAAGA
ATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAGAAAATATAGAGCCAAA
TTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAATAACAAT
Length of 3' end seq. 641
Connected seq. ID VSH322P
Connected seq. 
>VSH322P.Seq
TAAATATTTTGCACTTGAAGTTGGACGAAAAAAATTAAAAGTTCAAGTAAGGGTACCGAA
AAGGAAAGAATTAACGCTTGATGTAATGATGGCAAGATCAAAAAAACGTCGAGGACGTCA
GCGTAACGGATTAAAAGTAGTACGTAACTTTTAACGTATAGCTTACTATTTAGGTTTAAA
CCGGTAAAAGGTGGATAATGAGAGTTTATCTACAACAAATTACTGCACATGGAGGAAAAA
GCAAGCCTTAAGAATAACATATCGGAAGTAGAGCAGATAAAAAATGATGGAGCACATAAA
AAGGTTATTTACGAAGAAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCA
CAAAAGAGCCGAAAAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTT
CGAAAATTTATTTAGGCAAAATGTGAGAAGT----------CTTTAAGTAGTTTNATAGG
GGGATTAGTAATATGGGACGATAAGTATAATATTTGATAGTTTATATGATCACCAACATA
CATATGAAGTAAAAAGAGGATTAGTAATGGGAATGATGATGTTTATCATTTCAGAAGTAA
TGTTTTTCTTTTCATTTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAA
TAGGATGTGTATGGCCACCATATGGATTAACAGTATATTCATATATGGGATTACCATTAT
TAAATACAGTATTATTATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAA
CCGAACAAAAAGCGGTACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTA
AAAATTTAATGAATTTATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATG
AAAGAAGAGACAAATTTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAA
AATTAATAGCAATATCAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATT
TTTTTGAAAACCCAGAAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAA
TAGAATATGCATTAATAACAAT
Length of connected seq. 1092
Full length Seq ID -
Full length Seq. -
Length of full length seq. -