VSH319
Library VS
(Link to library)
Clone ID VSH319
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH319F
(Link to Original site)
Representative DNA sequence
>VSH319 (VSH319Q) /CSM/VS/VSH3-A/VSH319Q.Seq.d/
AAAAAAAAAANTANTTAAAATAAAAAAAAATTANTANTANTTTAAAATTTAAANTTAAAA
AAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
KKKXXKIKKNXXXFKI*x*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
kkkxx*nkkklxxx*nlxlkk---


Frame B:
KKKXXKIKKNXXXFKI*x*kk---


Frame C:
kkxxlk*kkixxxlkfkxkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH319 (VSH319Q) /CSM/VS/VSH3-A/VSH319Q.Seq.d/ 129 2e-30
VSF126 (VSF126Q) /CSM/VS/VSF1-B/VSF126Q.Seq.d/ 74 1e-13
VSF635 (VSF635Q) /CSM/VS/VSF6-B/VSF635Q.Seq.d/ 60 2e-09
VSH358 (VSH358Q) /CSM/VS/VSH3-C/VSH358Q.Seq.d/ 60 2e-09
VSH723 (VSH723Q) /CSM/VS/VSH7-A/VSH723Q.Seq.d/ 58 7e-09
VSF543 (VSF543Q) /CSM/VS/VSF5-B/VSF543Q.Seq.d/ 56 3e-08
VSJ154 (VSJ154Q) /CSM/VS/VSJ1-C/VSJ154Q.Seq.d/ 52 4e-07
VSD441 (VSD441Q) /CSM/VS/VSD4-B/VSD441Q.Seq.d/ 52 4e-07
VSI336 (VSI336Q) /CSM/VS/VSI3-B/VSI336Q.Seq.d/ 50 2e-06
VSJ210 (VSJ210Q) /CSM/VS/VSJ2-A/VSJ210Q.Seq.d/ 46 3e-05

own update 2000.12.23
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] SetUpBlastSearch failed.
[blastall] ERROR: [000.000] BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.26
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 38,917,427
protein update 2009. 3.23
PSORT -
5' end seq. ID VSH319F
5' end seq.
>VSH319F.Seq
AAAAAAAAAANTANTTAAAATAAAAAAAAATTANTANTANTTTAAAATTTAAANTTAAAA
AAAAAA----------
Length of 5' end seq. 66
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -