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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH272
Library VS
(Link to library)
Clone ID VSH272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11840-1
Original site URL
Representative seq. ID VSH272E
(Link to Original site)
Representative DNA sequence 
>VSH272 (VSH272Q) /CSM/VS/VSH2-C/VSH272Q.Seq.d/
GAGNAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAAGAGCCGAA
AAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAAATTTATTT
AGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAGTAGGAGCCAGAGCGGCAGCA
AGAGAAATAATAAATCAAGGATGGGGATATCCATTAGCAAACCATGAAGTATTATTTTTA
ACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTAAGAGGAACA
GTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTAAATTATTTTGGGGTA
ATAAGTTCAAAATTAGGATTATTAATCGCTTTAAGTAGTTTTATAGGGGGATTAGTAATA
TGGACGATAAGTATAATATTTGATAGTTTATATGATCANCAACATACATATGAAGTAAAA
AGAGGATTAGTAATGGGAATGATGATGTTTATCATTTCAGAAGTAATGTTTTTCTTTTCA
TTTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGG
CCACCATATGGATTAACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTA
TTATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCG
GTACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAAT
TTATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAA
TTTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATA
TCAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCA
GAAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTA
ATAA
sequence update 2001. 3.25
Translated Amino Acid sequence 
exgnmrpshi*kksihkraekrskhi*RKKEMKGFFENLFRQNVRSVINTGKKVGARAAA
REIINQGWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGV
ISSKLGLLIALSSFIGGLVIWTISIIFDSLYDXQHTYEVKRGLVMGMMMFIISEVMFFFS
FFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKA
VHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAI
SAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALI
Translated Amino Acid sequence (All Frames) 
Frame A:
exgnmrpshi*kksihkraekrskhi*RKKEMKGFFENLFRQNVRSVINTGKKVGARAAA
REIINQGWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGV
ISSKLGLLIALSSFIGGLVIWTISIIFDSLYDXQHTYEVKRGLVMGMMMFIISEVMFFFS
FFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKA
VHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAI
SAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALI


Frame B:
xreicdraifrrkastkepkkgvntfsekrk*kdfskiylgkm*ev**tqekk*eperqq
ek**ikdgdih*qtmkyyf*qmyinqni*kdihfi**eeq*hh*q*lyh*dfly*iilg*
*vqn*dy*sl*vvl*gd**ygr*v*ylivymixnihmk*ked**we**clsfqk*cfsfh
ffghifisvyhqi*q*dvyghhmd*qyihiwdyhy*iqyyyyyleqy*qmviqy*pnkkr
ymkrtkky*q*kkhlki**iyikqktv*ih*pl*mkeetnflekkvdkrtrlqnkn**qy
qqe*kn*ei*igiyiflktqki*sqiiknqqtyp**nmh**


Frame C:
xgkyatepyleekhpqksrkke*thlakkgnerifrkfi*akcekcnkhrkksrsqsgsk
rnnksrmgisiskp*siifnkcistktyektsisyskrnsstissnftirifciklfwgn
kfkiriinrfk*fyrgisnmddkyni**fi*sxtyi*skkrisngnddvyhfrsnvflfi
flviflyqfitkysnrmcmatiwinsifiygitiikysiiitiwsninrwlyninrtksg
t*kerksissrrsi*kfnefi*nkkqykyinlcr*kkrqifwkrk*trgqdcrtkinsni
srskrikrfrlgfiff*kprkyrakl*rtnklirnricin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH322 (VSH322Q) /CSM/VS/VSH3-A/VSH322Q.Seq.d/                        880   0.0
VSH272 (VSH272Q) /CSM/VS/VSH2-C/VSH272Q.Seq.d/                        880   0.0
VSE831 (VSE831Q) /CSM/VS/VSE8-B/VSE831Q.Seq.d/                        880   0.0
SLE524 (SLE524Q) /CSM/SL/SLE5-A/SLE524Q.Seq.d/                        880   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               880   0.0
SLE259 (SLE259Q) /CSM/SL/SLE2-C/SLE259Q.Seq.d/                        872   0.0
VFC894 (VFC894Q) /CSM/VF/VFC8-D/VFC894Q.Seq.d/                        858   0.0
CFH182 (CFH182Q) /CSM/CF/CFH1-D/CFH182Q.Seq.d/                        858   0.0
VSA536 (VSA536Q) /CSM/VS/VSA5-B/VSA536Q.Seq.d/                        763   0.0
CHM219 (CHM219Q) /CSM/CH/CHM2-A/CHM219Q.Seq.d/                        712   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D16579) Dictyostelium discoideum mitochondrial genes for Gl...   763   0.0    4
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   763   0.0    4
(AU267259) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    4
(AU267176) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    3
(AU263411) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    4
(AU035032) Dictyostelium discoideum slug cDNA, clone SLE524.      763   0.0    3
(BJ430337) Dictyostelium discoideum cDNA clone:ddv6l24, 3' e...   763   0.0    4
(BJ373110) Dictyostelium discoideum cDNA clone:ddc15c21, 3' ...   763   0.0    4
(AU267138) Dictyostelium discoideum vegetative cDNA clone:VS...   509   0.0    3
(AU034739) Dictyostelium discoideum slug cDNA, clone SLE259.      755   0.0    2
dna update 2009. 6. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY700145_33(AY700145|pid:none) Polysphondylium pallidum mitochon...   196   1e-48
EU275726_4(EU275726|pid:none) Polysphondylium pallidum strain PN...   195   2e-48
EU275727_5(EU275727|pid:none) Dictyostelium fasciculatum strain ...   190   6e-47
AY863211_13(AY863211|pid:none) Mortierella verticillata mitochon...    64   6e-09
AY955840_11(AY955840|pid:none) Paracoccidioides brasiliensis str...    62   4e-08
(P48891) RecName: Full=Cytochrome c oxidase subunit 3;          ...    60   9e-08
DQ768215_6(DQ768215|pid:none) Anoplophora glabripennis mitochond...    60   1e-07
(P26858) RecName: Full=Cytochrome c oxidase subunit 3;          ...    59   3e-07
DQ365900_35(DQ365900|pid:none) Oltmannsiellopsis viridis mitocho...    58   6e-07
EU100743_19(EU100743|pid:none) Cordyceps brongniartii isolate IM...    57   7e-07
protein update 2009. 3.23
PSORT 

 psg: 0.45  gvh: 0.37  alm: 0.25  top: 0.23  tms: 0.27  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 32.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: Golgi

>> prediction for VSH272 is end
5' end seq. ID VSH272F
5' end seq. 
>VSH272F.Seq
GAGNAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAAGAGCCGAA
AAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAAATTTATTT
AGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAGTAGGAGCCAGAGCGGCAGCA
AGAGAAATAATAAATCAAGGATGGGGATATCCATTAGCAAACCATGAAGTATTATTTTTA
ACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTAAGAGGAACA
GTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTAAATTATTTTGGGGTA
ATAAGTTCAAAATTAGGATTATTAATCGCTTTAAGTAGTTTTATAGGGGGATTAGTAATA
TGGACGATAAGTATAATATTTGATAGTTTATATGATCAACAACATACATATGAAGTAAAA
AGAGGATTAGTAATGGGAATGATGATGTTTA----------
Length of 5' end seq. 511
3' end seq. ID VSH272Z
3' end seq. 
>VSH272Z.Seq
----------TAGTAATATGGACGATAAGTATAATATTTGATAGTTTATATGATCACCAA
CATACATATGAAGTAAAAAGAGGATTAGTAATGGGAATGATGATGTTTATCATTTCAGAA
GTAATGTTTTTCTTTTCATTTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATA
GCAATAGGATGTGTATGGCCACCATATGGATTAACAGTATATTCATATATGGGATTACCA
TTATTAAATACAGTATTATTATTACTATCTGGAGCAATATTAACAGATGGTTATACAATA
TTAACCGAACAAAAAGCGGTACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCA
TTTAAAAATTTAATGAATTTATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTA
GATGAAAGAAGAGACAAATTTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAA
CAAAAATTAATAGCAATATCAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTA
TATTTTTTTGAAAACCCAGAAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCC
GTAATAGAATATGCATTAATAA
Length of 3' end seq. 612
Connected seq. ID VSH272P
Connected seq. 
>VSH272P.Seq
GAGNAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAAGAGCCGAA
AAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAAATTTATTT
AGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAGTAGGAGCCAGAGCGGCAGCA
AGAGAAATAATAAATCAAGGATGGGGATATCCATTAGCAAACCATGAAGTATTATTTTTA
ACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTAAGAGGAACA
GTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTAAATTATTTTGGGGTA
ATAAGTTCAAAATTAGGATTATTAATCGCTTTAAGTAGTTTTATAGGGGGATTAGTAATA
TGGACGATAAGTATAATATTTGATAGTTTATATGATCAACAACATACATATGAAGTAAAA
AGAGGATTAGTAATGGGAATGATGATGTTTA----------TAGTAATATGGACGATAAG
TATAATATTTGATAGTTTATATGATCACCAACATACATATGAAGTAAAAAGAGGATTAGT
AATGGGAATGATGATGTTTATCATTTCAGAAGTAATGTTTTTCTTTTCATTTTTTTGGTC
ATATTTTTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGCCACCATATGG
ATTAACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTATTATTACTATC
TGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGGTACATGAAAA
GAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATTTATATAAAAC
AAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAATTTTTTGGAAA
AGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATATCAGCAGGAGT
AAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAGAAAATATAGA
GCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAATAA
Length of connected seq. 1123
Full length Seq ID VSH272E
Full length Seq. 
>VSH272E.Seq
GAGNAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAAGAGCCGAA
AAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAAATTTATTT
AGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAGTAGGAGCCAGAGCGGCAGCA
AGAGAAATAATAAATCAAGGATGGGGATATCCATTAGCAAACCATGAAGTATTATTTTTA
ACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTAAGAGGAACA
GTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTAAATTATTTTGGGGTA
ATAAGTTCAAAATTAGGATTATTAATCGCTTTAAGTAGTTTTATAGGGGGATTAGTAATA
TGGACGATAAGTATAATATTTGATAGTTTATATGATCANCAACATACATATGAAGTAAAA
AGAGGATTAGTAATGGGAATGATGATGTTTATCATTTCAGAAGTAATGTTTTTCTTTTCA
TTTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGG
CCACCATATGGATTAACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTA
TTATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCG
GTACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAAT
TTATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAA
TTTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATA
TCAGCAGGAGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCA
GAAAATATAGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTA
ATAA
Length of full length seq. 1024