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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH226
Library VS
(Link to library)
Clone ID VSH226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16444-1
Original site URL
Representative seq. ID VSH226Z
(Link to Original site)
Representative DNA sequence 
>VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/
XXXXXXXXXXCCTCAACTTAATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGG
AACCAGTCGTTCAATGGTACGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAGTTGATG
ACAAAACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTG
AAAAAGTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAG
AATACGTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACA
TCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAA
CATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATT
TGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTAC
AAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAA
ACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGAC
AACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAA
CTAAATAACATTACAATATATCAAAATAAATAATAAATAAATACTCTATTTAAAAAGTAA
TTTTTTAATAGTAAACAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---LNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADKSE
KVKLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKT
YYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRN
NHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcsllltk*hynisk*iinkysi*kvi
f***t
Translated Amino Acid sequence (All Frames) 
Frame A:
---LNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADKSE
KVKLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKT
YYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRN
NHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcsllltk*hynisk*iinkysi*kvi
f***t


Frame B:
---st**imsfqimqik*wnqsfngtkrfynstvsgqlmtkpfipnihh*dqs*llislk
klnyqlmnqpmvlervkfknt*istmvlvfnisp*rlitslmlsqn*dlvvslsslfqkh
tihhsernyntlh*klkkiwtl*rnytf*simmtkvifykslqimlkinqlfslklsket
tmmvsvlvtlnpslkqskdnkklvetyrcvsitnvlyy*lnnitiyqnk**intlfkk*f
fnskq


Frame C:
---qlnrscrfkscr*ndgtsrsmvrkgftippflvs**qnhsyrifiikisrsc**v*k
s*itn**tsqwy*kesnsrirrflqwcwcstyrlkd**hh*cylkikiswclfphcskni
lyitqreittlfirn*rrfghfreithfnrl**qrlsftnlyk*c*r*tncfl*nypkkq
p*wfrcw*l*ipl*snrkttrnswkligvsqlqmffiin*itlqyikinnk*ilylksnf
livnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/                       1291   0.0
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/                       1291   0.0
VFN348 (VFN348Q) /CSM/VF/VFN3-B/VFN348Q.Seq.d/                       1291   0.0
VFN241 (VFN241Q) /CSM/VF/VFN2-B/VFN241Q.Seq.d/                       1291   0.0
VFM130 (VFM130Q) /CSM/VF/VFM1-B/VFM130Q.Seq.d/                       1291   0.0
VFL704 (VFL704Q) /CSM/VF/VFL7-A/VFL704Q.Seq.d/                       1291   0.0
VFK534 (VFK534Q) /CSM/VF/VFK5-B/VFK534Q.Seq.d/                       1291   0.0
VFJ105 (VFJ105Q) /CSM/VF/VFJ1-A/VFJ105Q.Seq.d/                       1291   0.0
VFG838 (VFG838Q) /CSM/VF/VFG8-B/VFG838Q.Seq.d/                       1291   0.0
VFG189 (VFG189Q) /CSM/VF/VFG1-D/VFG189Q.Seq.d/                       1291   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...  1269   0.0    1
(AU267100) Dictyostelium discoideum vegetative cDNA clone:VS...  1269   0.0    1
(AU263467) Dictyostelium discoideum vegetative cDNA clone:VS...  1269   0.0    1
(BJ435545) Dictyostelium discoideum cDNA clone:ddv27p11, 3' ...  1269   0.0    1
(BJ435475) Dictyostelium discoideum cDNA clone:ddv27a12, 3' ...  1269   0.0    1
(BJ434903) Dictyostelium discoideum cDNA clone:ddv25k07, 3' ...  1269   0.0    1
(BJ434510) Dictyostelium discoideum cDNA clone:ddv24h01, 3' ...  1269   0.0    1
(BJ433559) Dictyostelium discoideum cDNA clone:ddv22c09, 3' ...  1269   0.0    1
(BJ433234) Dictyostelium discoideum cDNA clone:ddv21n02, 3' ...  1269   0.0    1
(BJ432577) Dictyostelium discoideum cDNA clone:ddv19i01, 3' ...  1269   0.0    1
dna update 2009. 6. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   410   e-113
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA...   291   1e-77
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos...   291   1e-77
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ...   284   2e-75
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   284   2e-75
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ...   282   6e-75
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   282   6e-75
BC153801_1(BC153801|pid:none) Xenopus laevis hypothetical protei...   281   1e-74
BC077167_1(BC077167|pid:none) Danio rerio 4-hydroxyphenylpyruvat...   280   2e-74
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   279   7e-74
protein update 2009. 3.23
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: vacuolar

>> prediction for VSH226 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSH226Z
3' end seq. 
>VSH226Z.Seq
----------CCTCAACTTAATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGG
AACCAGTCGTTCAATGGTACGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAGTTGATG
ACAAAACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTG
AAAAAGTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAG
AATACGTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACA
TCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAA
CATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATT
TGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTAC
AAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAA
ACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGAC
AACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAA
CTAAATAACATTACAATATATCAAAATAAATAATAAATAAATACTCTATTTAAAAAGTAA
TTTTTTAATAGTAAACAAA
Length of 3' end seq. 729
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -