VSH207
Library VS
(Link to library)
Clone ID VSH207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12548-1
Original site URL
Representative seq. ID VSH207P
(Link to Original site)
Representative DNA sequence
>VSH207 (VSH207Q) /CSM/VS/VSH2-A/VSH207Q.Seq.d/
ATTTCTAGTATAATAATAATGGAAAATGAAACATCAATTGTAAAAGAAGAAGAAACTACT
GTTGTGCCAACACCAACAAATGATATTGAAAAAACAGATTCAGTAACAACTGCAACTACA
ACTACTGCAACTACTACTGAAACATCAGCAACTACAACATCAACACCAAATACACAACCA
ACACAATAAATTAAAAAAAAAAAAAANTANTTAAAANTAAAAAAAAAAXXXXXXXXXXAT
TTCTAGTATAATAATAATGGAAAATGAAACATCAATTGTAAAAGAAGAAGAAACTACTGT
TGTGCCNACACCAACAAATGATATTGAAAAAACAGATTCAGTNAC
sequence update 2001. 3.22
Translated Amino Acid sequence
issiiimenetsivkeeettvvptptndiektdsvttattttatttetsatttstpntqp
tq*IKKKKXXLKXKKK---

---ISSIIIMENETSIVKEEETTVVPTPTNDIEKTDSV


Translated Amino Acid sequence (All Frames)
Frame A:
issiiimenetsivkeeettvvptptndiektdsvttattttatttetsatttstpntqp
tq*IKKKKXXLKXKKK---

---ISSIIIMENETSIVKEEETTVVPTPTNDIEKTDSV

Frame B:
flv***wkmkhql*kkkklllcqhqqmilkkqiq*qlqlqllqlllkhqqlqhqhqihnq
hnklkkkkxx*x*kk---

---flv***wkmkhql*kkkklllcxhqqmilkkqiqx

Frame C:
f*ynnngk*ninckrrrnyccantnk*y*knrfsnncnynycnyy*nisnynintkyttn
tin*kkkkxxkxkkk---

---f*ynnngk*ninckrrrnyccaxtnk*y*knrfsx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH207 (VSH207Q) /CSM/VS/VSH2-A/VSH207Q.Seq.d/ 381 e-105
VHO171 (VHO171Q) /CSM/VH/VHO1-C/VHO171Q.Seq.d/ 204 6e-52
VFC137 (VFC137Q) /CSM/VF/VFC1-B/VFC137Q.Seq.d/ 44 0.001
VFL539 (VFL539Q) /CSM/VF/VFL5-B/VFL539Q.Seq.d/ 42 0.005
SLF515 (SLF515Q) /CSM/SL/SLF5-A/SLF515Q.Seq.d/ 42 0.005
VSK410 (VSK410Q) /CSM/VS/VSK4-A/VSK410Q.Seq.d/ 40 0.021
VSK319 (VSK319Q) /CSM/VS/VSK3-A/VSK319Q.Seq.d/ 40 0.021
VSE360 (VSE360Q) /CSM/VS/VSE3-C/VSE360Q.Seq.d/ 40 0.021
VSD524 (VSD524Q) /CSM/VS/VSD5-A/VSD524Q.Seq.d/ 40 0.021
VSC493 (VSC493Q) /CSM/VS/VSC4-D/VSC493Q.Seq.d/ 40 0.021

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU267072) Dictyostelium discoideum vegetative cDNA clone:VS... 206 2e-58 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 206 4e-49 1
(AU267073) Dictyostelium discoideum vegetative cDNA clone:VS... 200 2e-47 1
(BJ426627) Dictyostelium discoideum cDNA clone:ddv59m17, 5' ... 64 4e-06 1
(AC099883) Mus musculus clone RP23-11C24, LOW-PASS SEQUENCE ... 42 0.020 2
(AB121023) Plasmodium falciparum csp gene for circumsporozoi... 34 0.033 3
(M83173) Plasmodium falciparum circumsporozoite protein (CSP... 34 0.033 3
(AF540487) Plasmodium falciparum clone IND613MSR circumsporo... 34 0.039 3
(M15505) Plasmodium falciparum (clone pCsp6-Well) circumspor... 34 0.050 3
(CK422761) AUF_IpSpn_65_j24 Spleen cDNA library Ictalurus pu... 36 0.071 2
dna update 2009. 6. 5
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 73,142,207
protein update 2009. 3.23
PSORT

psg: 0.71 gvh: 0.10 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for VSH207 is nuc

5' end seq. ID VSH207F
5' end seq.
>VSH207F.Seq
ATTTCTAGTATAATAATAATGGAAAATGAAACATCAATTGTAAAAGAAGAAGAAACTACT
GTTGTGCCAACACCAACAAATGATATTGAAAAAACAGATTCAGTAACAACTGCAACTACA
ACTACTGCAACTACTACTGAAACATCAGCAACTACAACATCAACACCAAATACACAACCA
ACACAATAAATTAAAAAAAAAAAAAANTANTTAAAANTAAAAAAAAAA----------
Length of 5' end seq. 228
3' end seq. ID VSH207Z
3' end seq.
>VSH207Z.Seq
----------ATTTCTAGTATAATAATAATGGAAAATGAAACATCAATTGTAAAAGAAGA
AGAAACTACTGTTGTGCCNACACCAACAAATGATATTGAAAAAACAGATTCAGTNAC
Length of 3' end seq. 107
Connected seq. ID VSH207P
Connected seq.
>VSH207P.Seq
ATTTCTAGTATAATAATAATGGAAAATGAAACATCAATTGTAAAAGAAGAAGAAACTACT
GTTGTGCCAACACCAACAAATGATATTGAAAAAACAGATTCAGTAACAACTGCAACTACA
ACTACTGCAACTACTACTGAAACATCAGCAACTACAACATCAACACCAAATACACAACCA
ACACAATAAATTAAAAAAAAAAAAAANTANTTAAAANTAAAAAAAAAA----------AT
TTCTAGTATAATAATAATGGAAAATGAAACATCAATTGTAAAAGAAGAAGAAACTACTGT
TGTGCCNACACCAACAAATGATATTGAAAAAACAGATTCAGTNAC
Length of connected seq. 335
Full length Seq ID -
Full length Seq. -
Length of full length seq. -