VSH203
Library VS
(Link to library)
Clone ID VSH203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13482-1
Original site URL
Representative seq. ID VSH203P
(Link to Original site)
Representative DNA sequence
>VSH203 (VSH203Q) /CSM/VS/VSH2-A/VSH203Q.Seq.d/
TCAAATACCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTG
GTATGTTTTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATC
ACATCTATTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTG
AATATCTCGCTAAAGCAATGGCTGCCGTTACAAAAGATAATTAXXXXXXXXXXTCAAATA
CCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTT
TTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTA
TTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATAC
TCGCTAAAGCA
sequence update 2001. 3.22
Translated Amino Acid sequence
KYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVE
YLAKAMAAVTKDN---

---KYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINST
NVEYTR*s


Translated Amino Acid sequence (All Frames)
Frame A:
sntlknmvqlviglilplklvcfvslv*lqnklivwqmnitsi*lvmvvsqllvliqqml
nislkqwlplqkii---

---sntlknmvqlviglilplklvcfvslv*lqnklivwqmnitsi*lvmvvsqllvliq
qmlnilaka

Frame B:
qip*ktwfns*lvsyyhsnwyvlfhwfnsrts*sfgk*ishlfns*wsylncwy*fnkc*
isr*sngcrykr*l---

---qip*ktwfns*lvsyyhsnwyvlfhwfnsrts*sfgk*ishlfns*wsylncwy*fn
kc*iyslk

Frame C:
KYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVE
YLAKAMAAVTKDN---

---KYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINST
NVEYTR*s

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH203 (VSH203Q) /CSM/VS/VSH2-A/VSH203Q.Seq.d/ 795 0.0
SLK866 (SLK866Q) /CSM/SL/SLK8-C/SLK866Q.Seq.d/ 442 e-123
SLE772 (SLE772Q) /CSM/SL/SLE7-C/SLE772Q.Seq.d/ 442 e-123
SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/ 442 e-123
SLB133 (SLB133Q) /CSM/SL/SLB1-B/SLB133Q.Seq.d/ 442 e-123
SLI866 (SLI866Q) /CSM/SL/SLI8-C/SLI866Q.Seq.d/ 440 e-123
SLD508 (SLD508Q) /CSM/SL/SLD5-A/SLD508Q.Seq.d/ 406 e-112
VFE757 (VFE757Q) /CSM/VF/VFE7-C/VFE757Q.Seq.d/ 392 e-108
AFM850 (AFM850Q) /CSM/AF/AFM8-C/AFM850Q.Seq.d/ 392 e-108
VSI466 (VSI466Q) /CSM/VS/VSI4-C/VSI466Q.Seq.d/ 381 e-105

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU267065) Dictyostelium discoideum vegetative cDNA clone:VS... 442 e-120 1
(AU054177) Dictyostelium discoideum slug cDNA, clone SLK866. 442 e-120 1
(AU039572) Dictyostelium discoideum slug cDNA, clone SLE772. 442 e-120 1
(AU039562) Dictyostelium discoideum slug cDNA, clone SLE757. 442 e-120 1
(AU033526) Dictyostelium discoideum slug cDNA, clone SLB133. 442 e-120 1
(AU053538) Dictyostelium discoideum slug cDNA, clone SLI866. 440 e-119 1
(AU052549) Dictyostelium discoideum slug cDNA, clone SLD508. 406 e-109 1
(AU267066) Dictyostelium discoideum vegetative cDNA clone:VS... 392 e-105 1
(BJ347243) Dictyostelium discoideum cDNA clone:dda26d14, 3' ... 353 e-102 3
(BJ428023) Dictyostelium discoideum cDNA clone:ddv10b15, 3' ... 353 e-102 3
dna update 2009. 6. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55F21) RecName: Full=Aspartate aminotransferase, mitochondrial... 152 3e-36
BC054684_1(BC054684|pid:none) Danio rerio glutamic-oxaloacetic t... 106 2e-22
BT033749_1(BT033749|pid:none) Zea mays full-length cDNA clone ZM... 105 6e-22
BT054043_1(BT054043|pid:none) Zea mays full-length cDNA clone ZM... 105 6e-22
BT055178_1(BT055178|pid:none) Zea mays full-length cDNA clone ZM... 105 6e-22
D25323_1(D25323|pid:none) Panicum miliaceum gene for mitochondri... 102 3e-21
S22377(S22377;S40066;S18890) aspartate transaminase (EC 2.6.1.1)... 102 3e-21
L40579_1(L40579|pid:none) Glycine max (clone pSAT2) nuclear-enco... 102 3e-21
AK221257_1(AK221257|pid:none) Arabidopsis thaliana mRNA for aspa... 101 7e-21
(P46643) RecName: Full=Aspartate aminotransferase, mitochondrial... 101 7e-21
protein update 2009. 3.23
PSORT

psg: 0.95 gvh: 0.33 alm: 0.50 top: 0.27 tms: 0.00 mit: 0.31 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VSH203 is cyt

5' end seq. ID VSH203F
5' end seq.
>VSH203F.Seq
TCAAATACCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTG
GTATGTTTTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATC
ACATCTATTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTG
AATATCTCGCTAAAGCAATGGCTGCCGTTACAAAAGATAATTA----------
Length of 5' end seq. 223
3' end seq. ID VSH203Z
3' end seq.
>VSH203Z.Seq
----------TCAAATACCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACC
ACTCAAATTGGTATGTTTTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCA
AATGAATATCACATCTATTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCA
ACAAATGTTGAATATACTCGCTAAAGCA
Length of 3' end seq. 198
Connected seq. ID VSH203P
Connected seq.
>VSH203P.Seq
TCAAATACCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTG
GTATGTTTTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATC
ACATCTATTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTG
AATATCTCGCTAAAGCAATGGCTGCCGTTACAAAAGATAATTA----------TCAAATA
CCTTAAAAAACATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTT
TTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTA
TTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATAC
TCGCTAAAGCA
Length of connected seq. 421
Full length Seq ID -
Full length Seq. -
Length of full length seq. -