VSH193 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VSH193
Library	VS (Link to library)
Clone ID	VSH193 (Link to dictyBase)
Atlas ID	-
NBRP ID	G21451
dictyBase ID	DDB0220127
Link to Contig	Contig-U12777-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VS/VSH1-D/VSH193Q.Seq.d/
Representative seq. ID	VSH193E (Link to Original site)
Representative DNA sequence	>VSH193 (VSH193Q) /CSM/VS/VSH1-D/VSH193Q.Seq.d/ ATCAATTTATAGTGCATATTTAAAACAATTAGAAAAAGGTAAAACTGAAGAAGATTTGGA GGAATTGGGTAAAGAGATGACATTACTATGTGAAGAGGAGGAACAATTACGTTTAATGAT TGAAAATACACATCAAGAGAGAAAAGAAGTTGAACAATTAACATTACAACTTCAAGATAG AATTGCAACGTTGAAATCATTGGAAGATAGTTATTGGAGTTGTTTTAGTGAATTTCATTA TGAAACTTTTAGAAATAAAGACGAGAGAGATCAAACCACCGTTCAAATTCAATGGGTTAA TGACCATTTAGAAAGTTTAAAACAAACCAATATTCTCAATGATGCTTTCCATCTATGGCA TGATGGTCATTTTGGTACTATAAATTCATTACGTCTTGGAAAGTTACCAAGTCAACCAGT GGAATGGAACGAGATCAATGCAGCATGGGGGTTTAGCAGTATCACTTTTGGATGCAATGG CAAAGAAGTTGAAATTTAAATTCCAACAATTCACATTGGTACCAAATGGTAGTTGTTCAA GAGTTGATAAAAGAGATGTTGATCCACCATTGGCCTATGAACTTTATGGTACCAATGATA TTAGTTTAGGTCGTTTATTTTGGTATAGACGTTTCGATAATGGTATGATTGCTTTCCTTC AATGCATTAAAGAACTATGTGAACATATCACTGAAAAAGATCCAGAATTCTCTGTTCCCT ACAAAATCGATAAAGAATATATAGGTGGAATGTGTATTAAATTACAATTCACAAATGATG ATACTTGGACAAAATCTTTGAAATTTATGTTAACAAACTTAAAATGGATCTTAATTTGGA TTGTTAAAAATGAAACTTTAACTTTATTTAATAATCAACAATTTCAACAATCAAAATTAA ATAATAATCAAAATAATAATAATATTAATAATAATAATNATAATAATATTAATAAGAATN ATAATAATA
sequence update	2001. 3.25
Translated Amino Acid sequence	qfivhinnkkvklkkiwrnwvkrhyyvkrrnnyvlkihikrekklnnhynfkie lqrnhwkivigvvlvnfimklleiktreikppfkfnglmtikvnkpifsmmlsiygm mvilvlIHYVLESYQVNQWNGTRSMQHGGLAVSLLDAMAKKLKFKFQQFTLVPNGSCSR VDKRDVDPPLAYELYGTNDISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPY KIDKEYIGGMCIKLQFTNDDTWTKSLKFMLTNLKWILIWIVKNETLTLFNNQQFQQSKLN NNQNNNNINNNNXNNINKNXNN
Translated Amino Acid sequence (All Frames)	Frame A: inlcifktirkrnrrfggigrdditmrggtitfndkytsrekrstinittsr ncnveiigrllelfislnfkrrersnhrsnsmg*pfrkfktnqysqcfpsma wsfwyykfitswkvtkstsgmerdqcsmgvqyhfwmqwqrsnlnsnnshwyqmvvvq elikemlihhwpmnfmvpmilvvvyfgidvsimvllsfnalknyvnislkkiqnslfp tksiknivecvlnynsqmmilgqnlnlcqtngsfgllkmkllyliinnfnnqn iiikiiiiliiixiiilirxiii Frame B: siysaylkqlekgkteedleelgkemtllceeeeqlrlmienthqerkeveqltlqlqdr iatlksledsywscfsefhyetfrnkderdqttvqiqwvndhleslkqtnilndafhlwh dghfgtinslrlgklpsqpvewneinaawgfssitfgcngkeveiiptihigtkwlfk s*krcstigltlwyqyfrsfilvtfrwydcfpsmhrtmtyhkrsrilcsl qnrriyrwnvyitihk*yldkifeiyvnklkmdlnldcknfnfististikik skyxyex Frame C: qfivhinnkkvklkkiwrnwvkrhyyvkrrnnyvlkihikrekklnnhynfkie lqrnhwkivigvvlvnfimklleiktreikppfkfnglmtikvnkpifsmmlsiygm mvilvlIHYVLESYQVNQWNGTRSMQHGGLAVSLLDAMAKKLKFKFQQFTLVPNGSCSR VDKRDVDPPLAYELYGTNDISLGRLFWYRRFDNGMIAFLQCIKELCEHITEKDPEFSVPY KIDKEYIGGMCIKLQFTNDDTWTKSLKFMLTNLKWILIWIVKNETLTLFNNQQFQQSKLN NNQNNNNINNNNXNNINKNXNN
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSH193 (VSH193Q) /CSM/VS/VSH1-D/VSH193Q.Seq.d/ 1715 0.0 AHM558 (AHM558Q) /CSM/AH/AHM5-C/AHM558Q.Seq.d/ 952 0.0 SFG378 (SFG378Q) /CSM/SF/SFG3-D/SFG378Q.Seq.d/ 42 0.016 CFI445 (CFI445Q) /CSM/CF/CFI4-B/CFI445Q.Seq.d/ 42 0.016 CFG883 (CFG883Q) /CSM/CF/CFG8-D/CFG883Q.Seq.d/ 42 0.016 AHM190 (AHM190Q) /CSM/AH/AHM1-D/AHM190Q.Seq.d/ 42 0.016 AHI409 (AHI409Q) /CSM/AH/AHI4-A/AHI409Q.Seq.d/ 42 0.016 AFI132 (AFI132Q) /CSM/AF/AFI1-B/AFI132Q.Seq.d/ 42 0.016 VSE673 (VSE673Q) /CSM/VS/VSE6-D/VSE673Q.Seq.d/ 38 0.24 VSK159 (VSK159Q) /CSM/VS/VSK1-C/VSK159Q.Seq.d/ 36 0.96
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AU267057) Dictyostelium discoideum vegetative cDNA clone:VS... 957 0.0 1 (BJ355346) Dictyostelium discoideum cDNA clone:dda56c15, 3' ... 708 0.0 2 (AU267058) Dictyostelium discoideum vegetative cDNA clone:VS... 835 0.0 2 (GE432415) 294533795 Nasonia vitripennis Adult Male Nasonia ... 40 0.009 2 (GE376900) 292319556 Nasonia vitripennis Male Pupae Nasonia ... 40 0.009 2 (GE396418) 293780135 Nasonia vitripennis Female Pupae Nasoni... 40 0.009 2 (GE434160) 294544499 Nasonia vitripennis Adult Male Nasonia ... 40 0.009 2 (GE416251) 294497394 Nasonia vitripennis Adult Male Nasonia ... 40 0.009 2 (GE423903) 294513121 Nasonia vitripennis Adult Male Nasonia ... 40 0.009 2 (GE443601) 294567997 Nasonia vitripennis Adult Female Nasoni... 40 0.009 2
dna update	2009. 6. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54JI9) RecName: Full=Beclin-1-like protein B; AltName: Full=Au... 313 7e-84 AM075832_1(AM075832\|pid:none) Malus x domestica mRNA for beclin ... 133 5e-47 (Q9VCE1) RecName: Full=Beclin-1-like protein; AltName: Full=Auto... 119 3e-46 AB242872_1(AB242872\|pid:none) Beta vulgaris bvBCN1, bvLTP-2, bvA... 133 2e-45 AM075829_1(AM075829\|pid:none) Glycine max mRNA for beclin 1 prot... 126 4e-45 AY701316_1(AY701316\|pid:none) Nicotiana benthamiana autophagy pr... 122 8e-45 AM075834_1(AM075834\|pid:none) Solanum tuberosum mRNA for beclin ... 124 1e-44 AM075824_1(AM075824\|pid:none) Hordeum vulgare mRNA for beclin 1 ... 118 3e-44 AM051363_1(AM051363\|pid:none) Drosophila pseudoobscura mRNA for ... 114 4e-44 AY036610_1(AY036610\|pid:none) Triticum aestivum beclin1-like pro... 117 9e-44
protein update	2009. 3.23
PSORT	psg: 0.75 gvh: 0.48 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.10 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 40.0 %: nuclear 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for VSH193 is cyt
5' end seq. ID	VSH193F
5' end seq.	>VSH193F.Seq ATCAATTTATAGTGCATATTTAAAACAATTAGAAAAAGGTAAAACTGAAGAAGATTTGGA GGAATTGGGTAAAGAGATGACATTACTATGTGAAGAGGAGGAACAATTACGTTTAATGAT TGAAAATACACATCAAGAGAGAAAAGAAGTTGAACAATTAACATTACAACTTCAAGATAG AATTGCAACGTTGAAATCATTGGAAGATAGTTATTGGAGTTGTTTTAGTGAATTTCATTA TGAAACTTTTAGAAATAAAGACGAGAGAGATCAAACCACCGTTCAAATTCAATGGGTTAA TGACCATTTAGAAAGTTTAAAACAAACCAATATTCTCAATGATGCTTTCCATCTATGGCA TGATGGTCATTTTGGTACTATAAATTCATTACGTCTTGGAAAGTTACCAAGTCAACCAGT GGAATGGAACGAGATCAATGCAGCATGGGGGTTTAGCAGTATCACTTTTGGATGCAATGG CAA----------
Length of 5' end seq.	483
3' end seq. ID	VSH193Z
3' end seq.	>VSH193Z.Seq ----------CCAAGTCAACCAGTGGAATGGAACGAGATCAATGCAGCATGGGGTTTAGC AGTATCACTTTTGGATGCAATGGCAAAGAAGTTGAAATTTAAATTCCAACAATTCACATT GGTACCAAATGGTAGTTGTTCAAGAGTTGATAAAAGAGATGTTGATCCACCATTGGCCTA TGAACTTTATGGTACCAATGATATTAGTTTAGGTCGTTTATTTTGGTATAGACGTTTCGA TAATGGTATGATTGCTTTCCTTCAATGCATTAAAGAACTATGTGAACATATCACTGAAAA AGATCCAGAATTCTCTGTTCCCTACAAAATCGATAAAGAATATATAGGTGGAATGTGTAT TAAATTACAATTCACAAATGATGATACTTGGACAAAATCTTTGAAATTTATGTTAACAAA CTTAAAATGGATCTTAATTTGGATTGTTAAAAATGAAACTTTAACTTTATTTAATAATCA ACAATTTCAACAATCAAAATTAAATAATAATCAAAATAATAATAATATTAATAATAATAA TNATAATAATATTAATAAGAATNATAATAATA
Length of 3' end seq.	562
Connected seq. ID	VSH193P
Connected seq.	>VSH193P.Seq ATCAATTTATAGTGCATATTTAAAACAATTAGAAAAAGGTAAAACTGAAGAAGATTTGGA GGAATTGGGTAAAGAGATGACATTACTATGTGAAGAGGAGGAACAATTACGTTTAATGAT TGAAAATACACATCAAGAGAGAAAAGAAGTTGAACAATTAACATTACAACTTCAAGATAG AATTGCAACGTTGAAATCATTGGAAGATAGTTATTGGAGTTGTTTTAGTGAATTTCATTA TGAAACTTTTAGAAATAAAGACGAGAGAGATCAAACCACCGTTCAAATTCAATGGGTTAA TGACCATTTAGAAAGTTTAAAACAAACCAATATTCTCAATGATGCTTTCCATCTATGGCA TGATGGTCATTTTGGTACTATAAATTCATTACGTCTTGGAAAGTTACCAAGTCAACCAGT GGAATGGAACGAGATCAATGCAGCATGGGGGTTTAGCAGTATCACTTTTGGATGCAATGG CAA----------CCAAGTCAACCAGTGGAATGGAACGAGATCAATGCAGCATGGGGTTT AGCAGTATCACTTTTGGATGCAATGGCAAAGAAGTTGAAATTTAAATTCCAACAATTCAC ATTGGTACCAAATGGTAGTTGTTCAAGAGTTGATAAAAGAGATGTTGATCCACCATTGGC CTATGAACTTTATGGTACCAATGATATTAGTTTAGGTCGTTTATTTTGGTATAGACGTTT CGATAATGGTATGATTGCTTTCCTTCAATGCATTAAAGAACTATGTGAACATATCACTGA AAAAGATCCAGAATTCTCTGTTCCCTACAAAATCGATAAAGAATATATAGGTGGAATGTG TATTAAATTACAATTCACAAATGATGATACTTGGACAAAATCTTTGAAATTTATGTTAAC AAACTTAAAATGGATCTTAATTTGGATTGTTAAAAATGAAACTTTAACTTTATTTAATAA TCAACAATTTCAACAATCAAAATTAAATAATAATCAAAATAATAATAATATTAATAATAA TAATNATAATAATATTAATAAGAATNATAATAATA
Length of connected seq.	1045
Full length Seq ID	VSH193E
Full length Seq.	>VSH193E.Seq ATCAATTTATAGTGCATATTTAAAACAATTAGAAAAAGGTAAAACTGAAGAAGATTTGGA GGAATTGGGTAAAGAGATGACATTACTATGTGAAGAGGAGGAACAATTACGTTTAATGAT TGAAAATACACATCAAGAGAGAAAAGAAGTTGAACAATTAACATTACAACTTCAAGATAG AATTGCAACGTTGAAATCATTGGAAGATAGTTATTGGAGTTGTTTTAGTGAATTTCATTA TGAAACTTTTAGAAATAAAGACGAGAGAGATCAAACCACCGTTCAAATTCAATGGGTTAA TGACCATTTAGAAAGTTTAAAACAAACCAATATTCTCAATGATGCTTTCCATCTATGGCA TGATGGTCATTTTGGTACTATAAATTCATTACGTCTTGGAAAGTTACCAAGTCAACCAGT GGAATGGAACGAGATCAATGCAGCATGGGGGTTTAGCAGTATCACTTTTGGATGCAATGG CAAAGAAGTTGAAATTTAAATTCCAACAATTCACATTGGTACCAAATGGTAGTTGTTCAA GAGTTGATAAAAGAGATGTTGATCCACCATTGGCCTATGAACTTTATGGTACCAATGATA TTAGTTTAGGTCGTTTATTTTGGTATAGACGTTTCGATAATGGTATGATTGCTTTCCTTC AATGCATTAAAGAACTATGTGAACATATCACTGAAAAAGATCCAGAATTCTCTGTTCCCT ACAAAATCGATAAAGAATATATAGGTGGAATGTGTATTAAATTACAATTCACAAATGATG ATACTTGGACAAAATCTTTGAAATTTATGTTAACAAACTTAAAATGGATCTTAATTTGGA TTGTTAAAAATGAAACTTTAACTTTATTTAATAATCAACAATTTCAACAATCAAAATTAA ATAATAATCAAAATAATAATAATATTAATAATAATAATNATAATAATATTAATAAGAATN ATAATAATA
Length of full length seq.	969

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas