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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH180
Library VS
(Link to library)
Clone ID VSH180
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH180F
(Link to Original site)
Representative DNA sequence 
>VSH180 (VSH180Q) /CSM/VS/VSH1-D/VSH180Q.Seq.d/
CGTCCGCGGAACGCGTGGGTAATTACATAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
SAERVGNYIKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
rprnawvit*kk---


Frame B:
vrgtrg*lhkkk---


Frame C:
SAERVGNYIKK---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH180 (VSH180Q) /CSM/VS/VSH1-D/VSH180Q.Seq.d/                         56   4e-08
VSH354 (VSH354Q) /CSM/VS/VSH3-C/VSH354Q.Seq.d/                         38   0.008
VSJ864 (VSJ864Q) /CSM/VS/VSJ8-C/VSJ864Q.Seq.d/                         32   0.51
VSH874 (VSH874Q) /CSM/VS/VSH8-D/VSH874Q.Seq.d/                         32   0.51
VSH249 (VSH249Q) /CSM/VS/VSH2-C/VSH249Q.Seq.d/                         32   0.51
VSH141 (VSH141Q) /CSM/VS/VSH1-B/VSH141Q.Seq.d/                         32   0.51
VSJ573 (VSJ573Q) /CSM/VS/VSJ5-D/VSJ573Q.Seq.d/                         30   2.0
VSA678 (VSA678Q) /CSM/VS/VSA6-D/VSA678Q.Seq.d/                         30   2.0
VSJ456 (VSJ456Q) /CSM/VS/VSJ4-C/VSJ456Q.Seq.d/                         28   7.9
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267032) Dictyostelium discoideum vegetative cDNA clone:VS...    56   7e-05  1
(EL855949) CBXT12460.b1 NICHD_XGC_trop_25 Xenopus (Silurana)...    40   4.4    1
(EL849658) CBXT8142.b1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    40   4.4    1
(DR739664) FGAS084881 Triticum aestivum FGAS: Library 6 CAP ...    40   4.4    1
(DR739595) FGAS084812 Triticum aestivum FGAS: Library 6 CAP ...    40   4.4    1
(DR738011) FGAS083228 Triticum aestivum FGAS: Library 6 CAP ...    40   4.4    1
(DR736953) FGAS082323 Triticum aestivum FGAS: Library 5 GATE...    40   4.4    1
(DR736452) FGAS081822 Triticum aestivum FGAS: Library 5 GATE...    40   4.4    1
(DR736372) FGAS081742 Triticum aestivum FGAS: Library 5 GATE...    40   4.4    1
(DR736278) FGAS081648 Triticum aestivum FGAS: Library 5 GATE...    40   4.4    1
dna update 2009. 6. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 61,062,027
protein update 2009. 3.23
PSORT -
5' end seq. ID VSH180F
5' end seq. 
>VSH180F.Seq
CGTCCGCGGAACGCGTGGGTAATTACATAAAAAAAAAA----------
Length of 5' end seq. 38
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -