VSH176
Library VS
(Link to library)
Clone ID VSH176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15119-1
Original site URL
Representative seq. ID VSH176P
(Link to Original site)
Representative DNA sequence
>VSH176 (VSH176Q) /CSM/VS/VSH1-D/VSH176Q.Seq.d/
CACACCGTGTCTACTAAGGATACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGA
GTGTNTGATACTGTCATTTTTGACTTTATTGACATTTTGTTTCCCATCTATTGGAAGCTA
AAAAATTAACTTATAATAAAAAAATACCCTTTTTTTTAATATAAAAAAAAAAXXXXXXXX
XXATATTAAGACTTTATACGTCAAAACCTCTATGGGTCCATCACACCGTGTCTACTAAGG
ATACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGAGTGTTTGATACTGTCATTT
TTGACTTTATTGACATTTTGTTTCCCATCTATNGAAGCTAAAAAATTAACTTATAATAAA
AAAATACCCTTTTTTT
sequence update 2001. 3.22
Translated Amino Acid sequence
tpcllrillvsntpilg**ecxilsfltlltfcfpsigs*kinl**KNTLFFNIKKK---

---ILRLYTSKPLWVHHTVSTKDTVGF*ytntgligvfdtvifdfidilfpiyxs*kinl
**kntlf


Translated Amino Acid sequence (All Frames)
Frame A:
htvstkdtvgf*ytntgligvxdtvifdfidilfpiywklkn*liikkypff*ykkk---

---ILRLYTSKPLWVHHTVSTKDTVGF*ytntgligvfdtvifdfidilfpiyxs*kinl
**kntlf

Frame B:
tpcllrillvsntpilg**ecxilsfltlltfcfpsigs*kinl**KNTLFFNIKKK---

---y*dfirqnlygsitpcllrillvsntpilg**eclilsfltlltfcfpsxeakklty
nkkipff

Frame C:
hrvy*gycwflihqywvnrsv*ychf*ly*hfvshlleakkltynkkipffli*kk---

---iktlyvktsmgpshrvy*gycwflihqywvnrsv*ychf*ly*hfvshlxklkn*li
ikkypff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ259 (VSJ259Q) /CSM/VS/VSJ2-C/VSJ259Q.Seq.d/ 341 5e-93
VSH176 (VSH176Q) /CSM/VS/VSH1-D/VSH176Q.Seq.d/ 341 5e-93
VSD564 (VSD564Q) /CSM/VS/VSD5-C/VSD564Q.Seq.d/ 327 7e-89
FCL-AA22 (FCL-AA22Q) /CSM/FCL/FCL-AA/FCL-AA22Q.Seq.d/ 327 7e-89
FC-IC1388 (FC-IC1388Q) /CSM/FC-IC/FC-IC1388Q.Seq.d/ 327 7e-89
FC-IC0845 (FC-IC0845Q) /CSM/FC-IC/FC-IC0845Q.Seq.d/ 327 7e-89
FC-BQ02 (FC-BQ02Q) /CSM/FC/FC-BQ/FC-BQ02Q.Seq.d/ 319 2e-86
FC-140 (FC-140Q) /CSM/CG/CG-FC/FC-140Q.Seq.d/ 319 2e-86
FC-IC1111 (FC-IC1111Q) /CSM/FC-IC/FC-IC1111Q.Seq.d/ 315 3e-85
VSC391 (VSC391Q) /CSM/VS/VSC3-D/VSC391Q.Seq.d/ 297 6e-80

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU269656) Dictyostelium discoideum vegetative cDNA clone:VS... 341 1e-89 1
(AU267027) Dictyostelium discoideum vegetative cDNA clone:VS... 341 1e-89 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 297 1e-84 2
(AU285027) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 297 1e-84 2
(AU272458) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 297 1e-84 2
(AU271890) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 297 1e-84 2
(AU264249) Dictyostelium discoideum vegetative cDNA clone:VS... 297 1e-84 2
(AU269655) Dictyostelium discoideum vegetative cDNA clone:VS... 297 1e-84 2
(AU264250) Dictyostelium discoideum vegetative cDNA clone:VS... 323 3e-84 1
(AU284923) Dictyostelium discoideum gamete cDNA clone:FC-BQ0... 289 3e-82 2
dna update 2009. 6. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86L05) RecName: Full=60S ribosomal protein L10a; &AC117075_90... 42 0.008
EU124961_1(EU124961|pid:none) Arenicola marina ribosomal protein... 32 8.3

protein update 2009. 3.23
PSORT

psg: 0.64 gvh: 0.25 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: mitochondrial
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VSH176 is nuc

5' end seq. ID VSH176F
5' end seq.
>VSH176F.Seq
CACACCGTGTCTACTAAGGATACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGA
GTGTNTGATACTGTCATTTTTGACTTTATTGACATTTTGTTTCCCATCTATTGGAAGCTA
AAAAATTAACTTATAATAAAAAAATACCCTTTTTTTTAATATAAAAAAAAAA--------
--
Length of 5' end seq. 172
3' end seq. ID VSH176Z
3' end seq.
>VSH176Z.Seq
----------ATATTAAGACTTTATACGTCAAAACCTCTATGGGTCCATCACACCGTGTC
TACTAAGGATACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGAGTGTTTGATAC
TGTCATTTTTGACTTTATTGACATTTTGTTTCCCATCTATNGAAGCTAAAAAATTAACTT
ATAATAAAAAAATACCCTTTTTTT
Length of 3' end seq. 194
Connected seq. ID VSH176P
Connected seq.
>VSH176P.Seq
CACACCGTGTCTACTAAGGATACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGA
GTGTNTGATACTGTCATTTTTGACTTTATTGACATTTTGTTTCCCATCTATTGGAAGCTA
AAAAATTAACTTATAATAAAAAAATACCCTTTTTTTTAATATAAAAAAAAAA--------
--ATATTAAGACTTTATACGTCAAAACCTCTATGGGTCCATCACACCGTGTCTACTAAGG
ATACTGTTGGTTTCTAATACACCAATACTGGGTTAATAGGAGTGTTTGATACTGTCATTT
TTGACTTTATTGACATTTTGTTTCCCATCTATNGAAGCTAAAAAATTAACTTATAATAAA
AAAATACCCTTTTTTT
Length of connected seq. 366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -