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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH149
Library VS
(Link to library)
Clone ID VSH149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08358-1
Original site URL
Representative seq. ID VSH149Z
(Link to Original site)
Representative DNA sequence 
>VSH149 (VSH149Q) /CSM/VS/VSH1-C/VSH149Q.Seq.d/
XXXXXXXXXXCCGATCGGGAGCACGTAAAAAATAAAAATAAGACATGAAAANTTATAAAA
ATGAATTAAAAGTAAAAATAAATTTAGGAGAACACTTAAGAATTAAGTATTCCAGGATTA
GTAAAAAAAATAATGTATAAAACCCATTATTTAGAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---rsgarkk*k*DMKXYKNELKVKINLGEHLRIKYSRISKKNNV*nplfr
Translated Amino Acid sequence (All Frames) 
Frame A:
---rsgarkk*k*DMKXYKNELKVKINLGEHLRIKYSRISKKNNV*nplfr


Frame B:
---drehvknknkt*kxikmn*k*k*i*ent*elsipglvkkimykthyle


Frame C:
---igst*kikirhexl*k*iksknkfrrtlkn*vfqd**kk*cikpii*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH149 (VSH149Q) /CSM/VS/VSH1-C/VSH149Q.Seq.d/                        100   1e-20
VSJ746 (VSJ746Q) /CSM/VS/VSJ7-B/VSJ746Q.Seq.d/                         84   7e-16
VSH449 (VSH449Q) /CSM/VS/VSH4-C/VSH449Q.Seq.d/                         84   7e-16
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/                84   7e-16
SSJ606 (SSJ606Q) /CSM/SS/SSJ6-A/SSJ606Q.Seq.d/                         30   8.7
SLJ383 (SLJ383Q) /CSM/SL/SLJ3-D/SLJ383Q.Seq.d/                         30   8.7
SLC452 (SLC452Q) /CSM/SL/SLC4-C/SLC452Q.Seq.d/                         30   8.7
SLB620 (SLB620Q) /CSM/SL/SLB6-A/SLB620Q.Seq.d/                         30   8.7
CHL343 (CHL343Q) /CSM/CH/CHL3-B/CHL343Q.Seq.d/                         30   8.7
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X52680|X52680.1 D.discoideum mitochondrial DNA (ORF209).          52  2e-15  3
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.    52  1e-13  4
AC090460|AC090460.1 Homo sapiens chromosome 11 clone CTD-2318M15 map 11, LOW-PASS SEQUENCE SAMPLING.    40  7.2  1
dna update 2001. 3.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q2LCR4) RecName: Full=NADH-ubiquinone oxidoreductase subunit 9;...    36   1e-05
protein update 2009. 3.23
PSORT 

 psg: 0.60  gvh: 0.03  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.06  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSH149 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSH149Z
3' end seq. 
>VSH149Z.Seq
----------CCGATCGGGAGCACGTAAAAAATAAAAATAAGACATGAAAANTTATAAAA
ATGAATTAAAAGTAAAAATAAATTTAGGAGAACACTTAAGAATTAAGTATTCCAGGATTA
GTAAAAAAAATAATGTATAAAACCCATTATTTAGAA
Length of 3' end seq. 146
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -