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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH143
Library VS
(Link to library)
Clone ID VSH143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06837-1
Original site URL
Representative seq. ID VSH143P
(Link to Original site)
Representative DNA sequence 
>VSH143 (VSH143Q) /CSM/VS/VSH1-B/VSH143Q.Seq.d/
ATTTCAACAAAGAAAGTATTAACCTCTTAAATAAAATAGAATTTAAAACATGGCAATCTT
TAATTTAGTTGATCAAGCGTCATCATATGGGGCATATCACCATAATACAATTAATAAATT
CATTCACATTGTATTCGTTCCATTGATTCTTCTTACAGCATTTATTTTTGTAGATAATTT
ACCACATTCACCATTTTTAGAGGATTTATTAATACCATTAAATTCAATCAGTAATGGTTT
AATTCCAGTTGCACTTAGTACTCCACTTGCAATTGCATTATCTTTATATTATTGTATTTT
AGATGTTAGAGTTGGTTTAGCTTCAATGCTCTGGATAAATGCAGCAAATTATGCAGCAGT
ATATTCAATTAATACTTATGGATTAGAATTAGCAACTTATTATGGTACAATTGTACATAT
TGTATCTTGGATCTCACAATXXXXXXXXXXATTTCAAACAAAGAAAAGTATTAACCTCTT
AAATAAAATAGAATTTAAAACATGGCAATCTTTAATTTAGTTGATCAAGCGTCATCATAT
GGGGCATATCACCATAATACAATTAATAAATTCATTCACATTGTATTCGTTCCATTGATT
CTTCTTACAGCATTTATTTTTGTAGATAATTTACCACATTCACCATTTTTAGAGGATTTA
TTAATACCATTAAATTCAATCAGTAATGGTTTAATTCCAGTTGCACTTAGTACTCCACTT
GCAATTGCATTATCTTTATATTATTGTATTTTAGATGTTAGAGTTGGTTTAGCTTCAATG
CTCTGGATAAATGCAGCAAATTATGCAGCAGTATATTCAATTAATACTTATGGATTAGAA
TTAGCAACTTATTATGGTACAATTGTACATATTGTATCTTGGATCTCACAATTCATTGGA
CATGGAGTTTTTGAAGGTAGACGACCAGCAGTNGAGCAGTAATATCTTTCAAGTATTCAT
CGCNCCATTTTNTG
sequence update 2001. 3.22
Translated Amino Acid sequence 
fqqrky*plk*nri*NMAIFNLVDQASSYGAYHHNTINKFIHIVFVPLILLTAFIFVDNL
PHSPFLEDLLIPLNSISNGLIPVALSTPLAIALSLYYCILDVRVGLASMLWINAANYAAV
YSINTYGLELATYYGTIVHIVSWISQ---

---FQTKKSINLLNKIEFKTWQSLI*likrhhmghitiiqlinsftlysfh*fflqhlfl
*iiyhihhf*riy*yh*iqsvmv*fqlhlvlhlqlhylyiivf*mlelv*lqcsg*mqqi
mqqyiqlilmd*n*qlimvqlyilylgshnsldmeflkvddqqxssnifqvfiapfx
Translated Amino Acid sequence (All Frames) 
Frame A:
istkkvlts*ik*nlkhgnl*fs*ssviiwgisp*yn**ihshcirsidssysiyfcr*f
ttftifrgfintikfnq*wfnssct*ystcnciifillyfrc*swfsfnaldkcsklcss
ifn*ylwirisnllwynctycildlt---

---isnkeky*plk*nri*nmaifnlvdqassygayhhntinkfihivfvplilltafif
vdnlphspfledlliplnsisnglipvalstplaialslyycildvrvglasmlwinaan
yaavysintyglelatyygtivhivswisqfighgvfegrrpaveq*ylssihrxix

Frame B:
fqqrky*plk*nri*NMAIFNLVDQASSYGAYHHNTINKFIHIVFVPLILLTAFIFVDNL
PHSPFLEDLLIPLNSISNGLIPVALSTPLAIALSLYYCILDVRVGLASMLWINAANYAAV
YSINTYGLELATYYGTIVHIVSWISQ---

---FQTKKSINLLNKIEFKTWQSLI*likrhhmghitiiqlinsftlysfh*fflqhlfl
*iiyhihhf*riy*yh*iqsvmv*fqlhlvlhlqlhylyiivf*mlelv*lqcsg*mqqi
mqqyiqlilmd*n*qlimvqlyilylgshnsldmeflkvddqqxssnifqvfiapfx

Frame C:
fnkesinllnkiefktwqsli*likrhhmghitiiqlinsftlysfh*fflqhlfl*iiy
hihhf*riy*yh*iqsvmv*fqlhlvlhlqlhylyiivf*mlelv*lqcsg*mqqimqqy
iqlilmd*n*qlimvqlyilylgshn---

---fkqrkvlts*ik*nlkhgnl*fs*ssviiwgisp*yn**ihshcirsidssysiyfc
r*fttftifrgfintikfnq*wfnssct*ystcnciifillyfrc*swfsfnaldkcskl
cssifn*ylwirisnllwynctycildltihwtwsf*r*ttssxavisfkyssxhfx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH143 (VSH143Q) /CSM/VS/VSH1-B/VSH143Q.Seq.d/                       1853   0.0
VSI315 (VSI315Q) /CSM/VS/VSI3-A/VSI315Q.Seq.d/                        971   0.0
VSK346 (VSK346Q) /CSM/VS/VSK3-B/VSK346Q.Seq.d/                         36   0.97
VFJ893 (VFJ893Q) /CSM/VF/VFJ8-D/VFJ893Q.Seq.d/                         36   0.97
VFJ364 (VFJ364Q) /CSM/VF/VFJ3-C/VFJ364Q.Seq.d/                         36   0.97
VFD892 (VFD892Q) /CSM/VF/VFD8-D/VFD892Q.Seq.d/                         36   0.97
SSA585 (SSA585Q) /CSM/SS/SSA5-D/SSA585Q.Seq.d/                         36   0.97
VSJ459 (VSJ459Q) /CSM/VS/VSJ4-C/VSJ459Q.Seq.d/                         34   3.8
VSJ272 (VSJ272Q) /CSM/VS/VSJ2-C/VSJ272Q.Seq.d/                         34   3.8
VSD625 (VSD625Q) /CSM/VS/VSD6-B/VSD625Q.Seq.d/                         34   3.8
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX344559|AX344559.1 Sequence 10 from Patent WO0200932.            42  5e-08  11
AX349040|AX349040.1 Sequence 498 from Patent WO0202807.           44  9e-05  3
AX347075|AX347075.1 Sequence 2146 from Patent WO0200928.          44  9e-05  3
AX281514|AX281514.1 Sequence 178 from Patent WO0177376.           44  9e-05  3
AX344569|AX344569.1 Sequence 20 from Patent WO0200932.            38  0.001  9
AX345796|AX345796.1 Sequence 867 from Patent WO0200928.           38  0.002  4
AX344567|AX344567.1 Sequence 18 from Patent WO0200932.            38  0.002  6
AX458577|AX458577.1 Sequence 123 from Patent WO0246454.           38  0.002  7
AX348742|AX348742.1 Sequence 200 from Patent WO0202807.           38  0.003  3
AX281458|AX281458.1 Sequence 122 from Patent WO0177376.           38  0.003  3
dna update 2003. 8.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633899_257(CU633899|pid:none) Podospora anserina genomic DNA c...    80   1e-13
AF051235_1(AF051235|pid:none) Picea mariana YGL010w-like protein...    77   8e-13
BX842634_10(BX842634|pid:none) Neurospora crassa DNA linkage gro...    75   2e-12
CR382121_206(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    72   2e-11
CP000884_4862(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    72   2e-11
EF146384_1(EF146384|pid:none) Populus trichocarpa clone WS0117_M...    72   4e-11
FM992689_153(FM992689|pid:none) Candida dubliniensis CD36 chromo...    69   2e-10
AM449920_3(AM449920|pid:none) Vitis vinifera contig VV78X086819....    68   4e-10
A86321(A86321) F6A14.17 protein - Arabidopsis thaliana  &AC01180...    68   5e-10
CR380947_9(CR380947|pid:none) Candida glabrata strain CBS138 chr...    67   1e-09
protein update 2009. 3.23
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.17  top: 0.20  tms: 0.13  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VSH143 is end
5' end seq. ID VSH143F
5' end seq. 
>VSH143F.Seq
ATTTCAACAAAGAAAGTATTAACCTCTTAAATAAAATAGAATTTAAAACATGGCAATCTT
TAATTTAGTTGATCAAGCGTCATCATATGGGGCATATCACCATAATACAATTAATAAATT
CATTCACATTGTATTCGTTCCATTGATTCTTCTTACAGCATTTATTTTTGTAGATAATTT
ACCACATTCACCATTTTTAGAGGATTTATTAATACCATTAAATTCAATCAGTAATGGTTT
AATTCCAGTTGCACTTAGTACTCCACTTGCAATTGCATTATCTTTATATTATTGTATTTT
AGATGTTAGAGTTGGTTTAGCTTCAATGCTCTGGATAAATGCAGCAAATTATGCAGCAGT
ATATTCAATTAATACTTATGGATTAGAATTAGCAACTTATTATGGTACAATTGTACATAT
TGTATCTTGGATCTCACAAT----------
Length of 5' end seq. 440
3' end seq. ID VSH143Z
3' end seq. 
>VSH143Z.Seq
----------ATTTCAAACAAAGAAAAGTATTAACCTCTTAAATAAAATAGAATTTAAAA
CATGGCAATCTTTAATTTAGTTGATCAAGCGTCATCATATGGGGCATATCACCATAATAC
AATTAATAAATTCATTCACATTGTATTCGTTCCATTGATTCTTCTTACAGCATTTATTTT
TGTAGATAATTTACCACATTCACCATTTTTAGAGGATTTATTAATACCATTAAATTCAAT
CAGTAATGGTTTAATTCCAGTTGCACTTAGTACTCCACTTGCAATTGCATTATCTTTATA
TTATTGTATTTTAGATGTTAGAGTTGGTTTAGCTTCAATGCTCTGGATAAATGCAGCAAA
TTATGCAGCAGTATATTCAATTAATACTTATGGATTAGAATTAGCAACTTATTATGGTAC
AATTGTACATATTGTATCTTGGATCTCACAATTCATTGGACATGGAGTTTTTGAAGGTAG
ACGACCAGCAGTNGAGCAGTAATATCTTTCAAGTATTCATCGCNCCATTTTNTG
Length of 3' end seq. 524
Connected seq. ID VSH143P
Connected seq. 
>VSH143P.Seq
ATTTCAACAAAGAAAGTATTAACCTCTTAAATAAAATAGAATTTAAAACATGGCAATCTT
TAATTTAGTTGATCAAGCGTCATCATATGGGGCATATCACCATAATACAATTAATAAATT
CATTCACATTGTATTCGTTCCATTGATTCTTCTTACAGCATTTATTTTTGTAGATAATTT
ACCACATTCACCATTTTTAGAGGATTTATTAATACCATTAAATTCAATCAGTAATGGTTT
AATTCCAGTTGCACTTAGTACTCCACTTGCAATTGCATTATCTTTATATTATTGTATTTT
AGATGTTAGAGTTGGTTTAGCTTCAATGCTCTGGATAAATGCAGCAAATTATGCAGCAGT
ATATTCAATTAATACTTATGGATTAGAATTAGCAACTTATTATGGTACAATTGTACATAT
TGTATCTTGGATCTCACAAT----------ATTTCAAACAAAGAAAAGTATTAACCTCTT
AAATAAAATAGAATTTAAAACATGGCAATCTTTAATTTAGTTGATCAAGCGTCATCATAT
GGGGCATATCACCATAATACAATTAATAAATTCATTCACATTGTATTCGTTCCATTGATT
CTTCTTACAGCATTTATTTTTGTAGATAATTTACCACATTCACCATTTTTAGAGGATTTA
TTAATACCATTAAATTCAATCAGTAATGGTTTAATTCCAGTTGCACTTAGTACTCCACTT
GCAATTGCATTATCTTTATATTATTGTATTTTAGATGTTAGAGTTGGTTTAGCTTCAATG
CTCTGGATAAATGCAGCAAATTATGCAGCAGTATATTCAATTAATACTTATGGATTAGAA
TTAGCAACTTATTATGGTACAATTGTACATATTGTATCTTGGATCTCACAATTCATTGGA
CATGGAGTTTTTGAAGGTAGACGACCAGCAGTNGAGCAGTAATATCTTTCAAGTATTCAT
CGCNCCATTTTNTG
Length of connected seq. 964
Full length Seq ID -
Full length Seq. -
Length of full length seq. -