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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH131
Library VS
(Link to library)
Clone ID VSH131
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12167-1
Original site URL
Representative seq. ID VSH131P
(Link to Original site)
Representative DNA sequence 
>VSH131 (VSH131Q) /CSM/VS/VSH1-B/VSH131Q.Seq.d/
ACATAGCATATAAATTAACAACAATGGAAGGAGAACAATTACAAACTGCACCATACAACC
CAAGATTCCCACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATG
GTTGTGTCAAACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGA
ACTCATTATGTCCAGCTGCCTGGATTTCAGAATGGGATGAACAAAAAGCCGCTGATCTCC
TTCCCATCAGACAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTT
ATTCAAAAAAAAAGAAAAAAAAAAAGGACXXXXXXXXXXACAANCCAANATTNCCNCAAC
AAAACCNAANTNAACATTGTTGGGCNAACTACGTTGATTACTANGGNTGNGNCNAACA
sequence update 2001. 3.22
Translated Amino Acid sequence 
hsi*innngrrtitnctiqpkipttkpn*tllg*lr*llwlcqtlqw*qlkmsnffqlne
limsscldfrmg*tksr*spshqtefkyii*IINSSINNLFKKKEKKKG---

---TXQXXXNKTXXNIVGXTTLITXXXXN
Translated Amino Acid sequence (All Frames) 
Frame A:
t*hin*qqwkennyklhhttqdshnktklnivglttlitmvvsnitmvttqnvklfstq*
thyvqlpgfqngmnkkplisfpsdrv*iyninn***yq*fiqkkrkkkr---

---TXQXXXNKTXXNIVGXTTLITXXXXN

Frame B:
hsi*innngrrtitnctiqpkipttkpn*tllg*lr*llwlcqtlqw*qlkmsnffqlne
limsscldfrmg*tksr*spshqtefkyii*IINSSINNLFKKKEKKKG---

---qxxixxtkpxxtllgxlr*llxxxxt

Frame C:
iayklttmegeqlqtapynprfpqqnqtkhcwanyvdyygcvkhyngdnskcqtffnsmn
slcpaawisewdeqkaadllpirqslni*yk*livvsiiyskkkkkkkd---

---xpxxpqqnxxxhcwanyvdyxgxxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH131 (VSH131Q) /CSM/VS/VSH1-B/VSH131Q.Seq.d/                        603   e-172
VSI263 (VSI263Q) /CSM/VS/VSI2-C/VSI263Q.Seq.d/                        587   e-167
VSH265 (VSH265Q) /CSM/VS/VSH2-C/VSH265Q.Seq.d/                        587   e-167
VSD559 (VSD559Q) /CSM/VS/VSD5-C/VSD559Q.Seq.d/                        587   e-167
VSA196 (VSA196Q) /CSM/VS/VSA1-D/VSA196Q.Seq.d/                        587   e-167
VHK558 (VHK558Q) /CSM/VH/VHK5-C/VHK558Q.Seq.d/                        587   e-167
SSF773 (SSF773Q) /CSM/SS/SSF7-D/SSF773Q.Seq.d/                        575   e-163
SSE738 (SSE738Q) /CSM/SS/SSE7-B/SSE738Q.Seq.d/                        569   e-161
VSJ228 (VSJ228Q) /CSM/VS/VSJ2-B/VSJ228Q.Seq.d/                        551   e-156
VSF762 (VSF762Q) /CSM/VS/VSF7-C/VSF762Q.Seq.d/                        551   e-156
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC122291|AC122291.4 Mus musculus chromosome 15 clone RP23-255N20, complete sequence.    42  0.013  2
AX537130|AX537130.1 Sequence 731 from Patent WO02064766.          44  0.020  2
AL404156|AL404156.1 T7 end of clone AT0AA013E12 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    40  0.066  2
AC102601|AC102601.6 Mus musculus clone RP23-379D23, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    54  0.11  5
BF298705|BF298705.1 020PbC11 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    44  0.19  2
BF294945|BF294945.1 010PbE09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    44  0.20  2
BF294944|BF294944.1 010PbE08 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    44  0.21  2
AC117576|AC117576.3 Mus musculus clone RP23-34E15, WORKING DRAFT SEQUENCE, 14 unordered pieces.    50  0.31  5
AE003549|AE003549.4 Drosophila melanogaster chromosome 3L, section 36 of 83 of the complete sequence.    46  0.34  1
AL133247|AL133247.1 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 11B22  of CITB_978_SKB library from chromosome 2 of Homo sapiens.    46  0.34  1
dna update 2003. 8.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920427_744(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    86   3e-16
AM269997_1(AM269997|pid:none) Aspergillus niger contig An02c0020...    86   5e-16
(Q01519) RecName: Full=Cytochrome c oxidase polypeptide VIb;    ...    85   6e-16
CR382131_683(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    85   8e-16
CP000497_298(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    83   3e-15
CR382126_746(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    82   7e-15
AE017346_138(AE017346|pid:none) Cryptococcus neoformans var. neo...    81   1e-14
(P14854) RecName: Full=Cytochrome c oxidase subunit VIb isoform ...    80   3e-14
(Q5RCT0) RecName: Full=Cytochrome c oxidase subunit VIb isoform ...    80   3e-14
FM992693_390(FM992693|pid:none) Candida dubliniensis CD36 chromo...    79   5e-14
protein update 2009. 3.23
PSORT 

 psg: 0.24  gvh: 0.40  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSH131 is nuc
5' end seq. ID VSH131F
5' end seq. 
>VSH131F.Seq
ACATAGCATATAAATTAACAACAATGGAAGGAGAACAATTACAAACTGCACCATACAACC
CAAGATTCCCACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATG
GTTGTGTCAAACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGA
ACTCATTATGTCCAGCTGCCTGGATTTCAGAATGGGATGAACAAAAAGCCGCTGATCTCC
TTCCCATCAGACAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTT
ATTCAAAAAAAAAGAAAAAAAAAAAGGAC----------
Length of 5' end seq. 329
3' end seq. ID VSH131Z
3' end seq. 
>VSH131Z.Seq
----------ACAANCCAANATTNCCNCAACAAAACCNAANTNAACATTGTTGGGCNAAC
TACGTTGATTACTANGGNTGNGNCNAACA
Length of 3' end seq. 79
Connected seq. ID VSH131P
Connected seq. 
>VSH131P.Seq
ACATAGCATATAAATTAACAACAATGGAAGGAGAACAATTACAAACTGCACCATACAACC
CAAGATTCCCACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATG
GTTGTGTCAAACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGA
ACTCATTATGTCCAGCTGCCTGGATTTCAGAATGGGATGAACAAAAAGCCGCTGATCTCC
TTCCCATCAGACAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTT
ATTCAAAAAAAAAGAAAAAAAAAAAGGAC----------ACAANCCAANATTNCCNCAAC
AAAACCNAANTNAACATTGTTGGGCNAACTACGTTGATTACTANGGNTGNGNCNAACA
Length of connected seq. 408
Full length Seq ID -
Full length Seq. -
Length of full length seq. -