VSH115
Library VS
(Link to library)
Clone ID VSH115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSH115F
(Link to Original site)
Representative DNA sequence
>VSH115 (VSH115Q) /CSM/VS/VSH1-A/VSH115Q.Seq.d/
ATTTTTTTTTTTTTTTAAATNCATTTTTTAATTAATTAAAAANCTAAAAANCTAAAAACC
TAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
FFFFLNXFFN*lkx*kxknlkk---


Translated Amino Acid sequence (All Frames)
Frame A:
iffff*xhflin*kxkxlkt*kk---


Frame B:
fffffkxif*likxlkx*kpkkk---


Frame C:
FFFFLNXFFN*lkx*kxknlkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH115 (VSH115Q) /CSM/VS/VSH1-A/VSH115Q.Seq.d/ 34 0.26
SSF828 (SSF828Q) /CSM/SS/SSF8-B/SSF828Q.Seq.d/ 30 4.1

own update 2001. 3.26
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 928861
Number of Sequences: 25425471
Number of extensions: 928861
Number of successful extensions: 926720
Number of sequences better than 10.0: 0
length of query: 81
length of database: P,827,891,563
effective HSP length: 21
effective length of query: 60
effective length of database: P,293,956,672
effective search space: 1937637400320
effective search space used: 1937637400320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
[blastall] WARNING: [000.000] Reached max 200 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.26
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 25,340,906
protein update 2009. 3.23
PSORT -
5' end seq. ID VSH115F
5' end seq.
>VSH115F.Seq
ATTTTTTTTTTTTTTTAAATNCATTTTTTAATTAATTAAAAANCTAAAAANCTAAAAACC
TAAAAAAAAAA----------
Length of 5' end seq. 71
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -