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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSH111
Library VS
(Link to library)
Clone ID VSH111
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11341-1
Original site URL
Representative seq. ID VSH111P
(Link to Original site)
Representative DNA sequence 
>VSH111 (VSH111Q) /CSM/VS/VSH1-A/VSH111Q.Seq.d/
GCAAATCCACAATATAGTAATGCTGTTATTGAACAAAAATTGGATCAAATTAGAGATACC
ATTAATAATTTACATAGAGATAACCGAGTCTCTAGAGATTATACTCATTATCTTAGAGAG
GTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCGTTGTCTCAAATGAATTCATCAAA
AATATTGAATTGGAAGATAAATTACGTAGAGAGGAAGAAAAGAATCAAAGATTAATTGAA
GAGATTCATTTACTTGAAACCTATTTCATCTTAAAAGAAAAATCAAAAGCAAAACGTTTA
TCAACCACTAAAGATCTTTTAACTAGATCAAGATCACCAACTTTACCAAGTTCTATTAAT
ATGTCAACCTCATCTTTAGGGTAGTTCTTTCAAGTTCTGCTTATAACAATAATAATAATA
ATAATTATGTACCAAAATAATTAATTTTTAAAAAATTAAATAAATTAAAAAATTAATAAA
TATAAAAAAAAAAXXXXXXXXXXGCAAATCCACAATATAGTAATGCTGTTATTGAACAAA
AATTGGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAACCGAGTCTCTAGAG
ATTATACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCG
TTGTCTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTACGTAGAGAGGAAG
AAAAGAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTATTTCATCTTAAAAG
AAAAATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACTAGATCAAGATCAC
CAACTTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGTTCTTCAAGTTCTG
CTTATAACAATAATAATAATAATAATTATGTACCAAAATAATTAATTTTTAAAAAATTAA
ATAAATTAAAAAATTAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
qihnivmlllnknwikleipliiyieitesleiiliilerlkt*dhhfkkkplsqmnssk
ilnwkinyverkkrikd*lkrfiylkpiss*kknqkqnvyqplkif*ldqdhqlyqvlli
cqphl*gssfkfcl*q*****lctkiinf*kik*IKKLINIKKK---

---ANPQYSNAVIEQKLDQIRDTINNLHRDNRVSRDYTHYLREVEDLRSSLQKETVVSNE
FIKNIELEDKLRREEEKNQRLIEEIHLLETYFILKEKSKAKRLSTTKDLLTRSRSPTLPS
SINMSTSSLGSSSSSAYNNNNNNNYVPK*lifkklnklkn**
Translated Amino Acid sequence (All Frames) 
Frame A:
anpqysnavieqkldqirdtinnlhrdnrvsrdythylrevedlrsslqketvvsnefik
nieledklrreeeknqrlieeihlletyfilkekskakrlsttkdlltrsrsptlpssin
mstsslg*ffqvllitiiiiiimyqnn*flkn*in*kinkykkk---

---ANPQYSNAVIEQKLDQIRDTINNLHRDNRVSRDYTHYLREVEDLRSSLQKETVVSNE
FIKNIELEDKLRREEEKNQRLIEEIHLLETYFILKEKSKAKRLSTTKDLLTRSRSPTLPS
SINMSTSSLGSSSSSAYNNNNNNNYVPK*lifkklnklkn**

Frame B:
qihnivmlllnknwikleipliiyieitesleiiliilerlkt*dhhfkkkplsqmnssk
ilnwkinyverkkrikd*lkrfiylkpiss*kknqkqnvyqplkif*ldqdhqlyqvlli
cqphl*gssfkfcl*q*****lctkiinf*kik*IKKLINIKKK---

---qihnivmlllnknwikleipliiyieitesleiiliilerlkt*dhhfkkkplsqmn
sskilnwkinyverkkrikd*lkrfiylkpiss*kknqkqnvyqplkif*ldqdhqlyqv
llicqphl*vvlqvllitiiiiiimyqnn*flkn*in*kin

Frame C:
ksti**ccy*tkigsn*ryh**ft*r*psl*rlysls*rg*rlkiitskrnrclk*ihqk
y*igr*it*rgrkeskin*rdsft*nlfhlkrkiksktfinh*rsfn*ikitnftkfy*y
vnlifrvvlsssaynnnnnnnyvpk*lifkklnklkn**i*kk---

---ksti**ccy*tkigsn*ryh**ft*r*psl*rlysls*rg*rlkiitskrnrclk*i
hqky*igr*it*rgrkeskin*rdsft*nlfhlkrkiksktfinh*rsfn*ikitnftkf
y*yvnlifr*ffkfcl*q*****lctkiinf*kik*ikkli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH111 (VSH111Q) /CSM/VS/VSH1-A/VSH111Q.Seq.d/                        807   0.0
VSH614 (VSH614Q) /CSM/VS/VSH6-A/VSH614Q.Seq.d/                        803   0.0
SHA507 (SHA507Q) /CSM/SH/SHA5-A/SHA507Q.Seq.d/                        803   0.0
AHF865 (AHF865Q) /CSM/AH/AHF8-C/AHF865Q.Seq.d/                        803   0.0
AHC377 (AHC377Q) /CSM/AH/AHC3-D/AHC377Q.Seq.d/                        803   0.0
VSH288 (VSH288Q) /CSM/VS/VSH2-D/VSH288Q.Seq.d/                        797   0.0
SHC552 (SHC552Q) /CSM/SH/SHC5-C/SHC552Q.Seq.d/                        795   0.0
VHQ354 (VHQ354Q) /CSM/VH/VHQ3-C/VHQ354Q.Seq.d/                        789   0.0
SHK664 (SHK664Q) /CSM/SH/SHK6-C/SHK664Q.Seq.d/                        789   0.0
AHQ488 (AHQ488Q) /CSM/AH/AHQ4-D/AHQ488Q.Seq.d/                        789   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF474341|AF474341.1 Dictyostelium discoideum ABC transporter ABCC.9 (abcC9) gene, complete cds.   803  0.0  3
AF081586|AF081586.1 Dictyostelium discoideum developmental protein DG1094 (DG1094) gene, partial cds.   190  2e-44  1
AC021604|AC021604.4 Homo sapiens clone RP11-223G9, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  0.003  4
AC127701|AC127701.2 Homo sapiens BAC clone RP11-79F18 from UL, complete sequence.    42  0.012  4
AZ843813|AZ843813.1 2M0142A20R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0142A20 R, DNA sequence.    44  0.017  2
AC139826|AC139826.1 Homo sapiens chromosome 16 clone RP11-563G9, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  0.023  3
AC007738|AC007738.2 Homo sapiens BAC clone RP11-32P22 from 2, complete sequence.    36  0.031  7
AC140144|AC140144.1 Homo sapiens chromosome 5 clone RP11-1429M18, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  0.045  4
AC136608|AC136608.1 Homo sapiens chromosome 16 clone RP11-139C7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42  0.049  4
AC142389|AC142389.1 Homo sapiens chromosome 16 clone RP11-867L16, WORKING DRAFT SEQUENCE, 8 unordered pieces.    42  0.066  4
dna update 2003. 8.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF081586_1(AF081586|pid:none) Dictyostelium discoideum developme...    68   5e-10
CP000152_3093(CP000152|pid:none) Burkholderia sp. 383 chromosome...    34   8.2
protein update 2009. 3.23
PSORT 

 psg: 0.73  gvh: 0.21  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSH111 is nuc
5' end seq. ID VSH111F
5' end seq. 
>VSH111F.Seq
GCAAATCCACAATATAGTAATGCTGTTATTGAACAAAAATTGGATCAAATTAGAGATACC
ATTAATAATTTACATAGAGATAACCGAGTCTCTAGAGATTATACTCATTATCTTAGAGAG
GTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCGTTGTCTCAAATGAATTCATCAAA
AATATTGAATTGGAAGATAAATTACGTAGAGAGGAAGAAAAGAATCAAAGATTAATTGAA
GAGATTCATTTACTTGAAACCTATTTCATCTTAAAAGAAAAATCAAAAGCAAAACGTTTA
TCAACCACTAAAGATCTTTTAACTAGATCAAGATCACCAACTTTACCAAGTTCTATTAAT
ATGTCAACCTCATCTTTAGGGTAGTTCTTTCAAGTTCTGCTTATAACAATAATAATAATA
ATAATTATGTACCAAAATAATTAATTTTTAAAAAATTAAATAAATTAAAAAATTAATAAA
TATAAAAAAAAAA----------
Length of 5' end seq. 493
3' end seq. ID VSH111Z
3' end seq. 
>VSH111Z.Seq
----------GCAAATCCACAATATAGTAATGCTGTTATTGAACAAAAATTGGATCAAAT
TAGAGATACCATTAATAATTTACATAGAGATAACCGAGTCTCTAGAGATTATACTCATTA
TCTTAGAGAGGTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCGTTGTCTCAAATGA
ATTCATCAAAAATATTGAATTGGAAGATAAATTACGTAGAGAGGAAGAAAAGAATCAAAG
ATTAATTGAAGAGATTCATTTACTTGAAACCTATTTCATCTTAAAAGAAAAATCAAAAGC
AAAACGTTTATCAACCACTAAAGATCTTTTAACTAGATCAAGATCACCAACTTTACCAAG
TTCTATTAATATGTCAACCTCATCTTTAGGTAGTTCTTCAAGTTCTGCTTATAACAATAA
TAATAATAATAATTATGTACCAAAATAATTAATTTTTAAAAAATTAAATAAATTAAAAAA
TTAATAA
Length of 3' end seq. 477
Connected seq. ID VSH111P
Connected seq. 
>VSH111P.Seq
GCAAATCCACAATATAGTAATGCTGTTATTGAACAAAAATTGGATCAAATTAGAGATACC
ATTAATAATTTACATAGAGATAACCGAGTCTCTAGAGATTATACTCATTATCTTAGAGAG
GTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCGTTGTCTCAAATGAATTCATCAAA
AATATTGAATTGGAAGATAAATTACGTAGAGAGGAAGAAAAGAATCAAAGATTAATTGAA
GAGATTCATTTACTTGAAACCTATTTCATCTTAAAAGAAAAATCAAAAGCAAAACGTTTA
TCAACCACTAAAGATCTTTTAACTAGATCAAGATCACCAACTTTACCAAGTTCTATTAAT
ATGTCAACCTCATCTTTAGGGTAGTTCTTTCAAGTTCTGCTTATAACAATAATAATAATA
ATAATTATGTACCAAAATAATTAATTTTTAAAAAATTAAATAAATTAAAAAATTAATAAA
TATAAAAAAAAAA----------GCAAATCCACAATATAGTAATGCTGTTATTGAACAAA
AATTGGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAACCGAGTCTCTAGAG
ATTATACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTTCAAAAAGAAACCG
TTGTCTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTACGTAGAGAGGAAG
AAAAGAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTATTTCATCTTAAAAG
AAAAATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACTAGATCAAGATCAC
CAACTTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGTTCTTCAAGTTCTG
CTTATAACAATAATAATAATAATAATTATGTACCAAAATAATTAATTTTTAAAAAATTAA
ATAAATTAAAAAATTAATAA
Length of connected seq. 970
Full length Seq ID -
Full length Seq. -
Length of full length seq. -