>VSG887 (VSG887Q) /CSM/VS/VSG8-D/VSG887Q.Seq.d/
CAAACTAGTCGTAACATTACTTATCACCCATACCTTGAAGGTACCACTCTTTGTAACATC
TTTTATCCAACTGAAGATTGTATTAAAGTTGCTGGTGGTGCTTTCACTGTTTATCTCGAT
CATGGTGAATCAAAGATTTATTATCCAATGAATTAAATAAAAAAATAATAAAAAAATATA
CAAATAATAAAAAAAAAAXXXXXXXXXX

QTSRNITYHPYLEGTTLCNIFYPTEDCIKVAGGAFTVYLDHGESKIYYPMN*ikk**kni
qiikk---

Frame A:
QTSRNITYHPYLEGTTLCNIFYPTEDCIKVAGGAFTVYLDHGESKIYYPMN*ikk**kni
qiikk---


Frame B:
klvvtllithtlkvplfvtsfiqlkivlkllvvlslfisimvnqrfiiq*ik*knnkkiy
k**kk---


Frame C:
n*s*hylspip*ryhsl*hllsn*rly*scwwcfhclsrsw*ikdllsnelnkkiikkyt
nnkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG887 (VSG887Q) /CSM/VS/VSG8-D/VSG887Q.Seq.d/                        303   5e-82
VSC139 (VSC139Q) /CSM/VS/VSC1-B/VSC139Q.Seq.d/                        303   5e-82
SLK177 (SLK177Q) /CSM/SL/SLK1-D/SLK177Q.Seq.d/                        303   5e-82
SLJ794 (SLJ794Q) /CSM/SL/SLJ7-D/SLJ794Q.Seq.d/                        303   5e-82
SLG707 (SLG707Q) /CSM/SL/SLG7-A/SLG707Q.Seq.d/                        303   5e-82
SLD247 (SLD247Q) /CSM/SL/SLD2-B/SLD247Q.Seq.d/                        303   5e-82
SLB737 (SLB737Q) /CSM/SL/SLB7-B/SLB737Q.Seq.d/                        303   5e-82
VFL228 (VFL228Q) /CSM/VF/VFL2-B/VFL228Q.Seq.d/                        285   1e-76
VFG403 (VFG403Q) /CSM/VF/VFG4-A/VFG403Q.Seq.d/                        280   8e-75
VFK777 (VFK777Q) /CSM/VF/VFK7-D/VFK777Q.Seq.d/                        278   3e-74

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH562562|BH562562.1 BOGQE55TR BOGQ Brassica oleracea genomic clone BOGQE55, DNA sequence.    42  2.5  1
AL437019|AL437019.1 T7 end of clone BC0AA006F11 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    42  2.5  1
BH436691|BH436691.1 BOHAQ60TF BOHA Brassica oleracea genomic clone BOHAQ60, DNA sequence.    42  2.5  1
AC007367|AC007367.3 Homo sapiens BAC clone RP11-518G12 from 2, complete sequence.    38  7.6  2
BX465843|BX465843.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  9.9  1
AC105169|AC105169.4 Mus musculus clone RP24-124K4, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40  9.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q645J3) RecName: Full=Sigma 1-type opioid receptor;          Sh...    33   2.9

 psg: 0.73  gvh: 0.31  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for VSG887 is nuc

>VSG887F.Seq
CAAACTAGTCGTAACATTACTTATCACCCATACCTTGAAGGTACCACTCTTTGTAACATC
TTTTATCCAACTGAAGATTGTATTAAAGTTGCTGGTGGTGCTTTCACTGTTTATCTCGAT
CATGGTGAATCAAAGATTTATTATCCAATGAATTAAATAAAAAAATAATAAAAAAATATA
CAAATAATAAAAAAAAAA----------