>VSG886 (VSG886Q) /CSM/VS/VSG8-D/VSG886Q.Seq.d/
CATGGCCGAAAAAACTAAAGCTTTTGAACTCAGAACCAAAAACAAGACTCAATTACTTGA
ACACCTCAAGGAACTCAGAACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACC
AAACCCAAGCAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAAC
TGTTTTCAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAAAAATCATCAAG
CAAGATCCCAACTGATCTCCGTTACAAAAAGACTAGAGCCATCAGAAGACGTCTCACCAA
CAAACAATCTAAAGTTGTCACCTTAAGAGTTTCCAAAACTGCCACCAACTTCCCACAAAG
AGTTTTCGCTGTTAAAGCCTAAATTTGCATTTAGATGATTTTAAAAAATAAXXXXXXXXX
X

MAEKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLT
VFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQR
VFAVKA*ici*milkn---

Frame A:
hgrkn*sf*tqnqkqdsit*tpqgtqn*alkfkscps*itkpkqisqnryrp*sycpcfn
cfqpnskepspcclf*kiikqdpn*splqkd*shqktshqqti*schlksfqnchqlptk
sfrc*slnlhlddfkk---


Frame B:
MAEKTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLT
VFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQR
VFAVKA*ici*milkn---


Frame C:
wpkklkllnsepktrlnylntsrnselssqv*elpklnhqtqan*pksvpsvkllpvf*l
fstklkrtisvlsilknhqarsqlisvtkrlepsedvsptnnlklsp*efpklpptshke
fsllkpkfafr*f*ki---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ543 (VSJ543Q) /CSM/VS/VSJ5-B/VSJ543Q.Seq.d/                        815   0.0
VSJ336 (VSJ336Q) /CSM/VS/VSJ3-B/VSJ336Q.Seq.d/                        815   0.0
VSG886 (VSG886Q) /CSM/VS/VSG8-D/VSG886Q.Seq.d/                        815   0.0
VSG811 (VSG811Q) /CSM/VS/VSG8-A/VSG811Q.Seq.d/                        815   0.0
VSD254 (VSD254Q) /CSM/VS/VSD2-C/VSD254Q.Seq.d/                        815   0.0
VSC307 (VSC307Q) /CSM/VS/VSC3-A/VSC307Q.Seq.d/                        815   0.0
VSA850 (VSA850Q) /CSM/VS/VSA8-C/VSA850Q.Seq.d/                        815   0.0
VHM879 (VHM879Q) /CSM/VH/VHM8-D/VHM879Q.Seq.d/                        815   0.0
VSI395 (VSI395Q) /CSM/VS/VSI3-D/VSI395Q.Seq.d/                        813   0.0
VSD708 (VSD708Q) /CSM/VS/VSD7-A/VSD708Q.Seq.d/                        813   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL132954|AL132954.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12.    46  0.025  2
CB264903|CB264903.1 24-E015021-035-004-O05-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000O054Q 5-PRIME, mRNA sequence.    46  0.34  1
AL084068|AL084068.1 Arabidopsis thaliana genome survey sequence T7 end of BAC F8C2 of  IGF library from strain Columbia of Arabidopsis thaliana.    46  0.34  1
BE038964|BE038964.1 AB07H02 AB Arabidopsis thaliana cDNA 5' similar to ribosomal protein l35, mRNA sequence.    46  0.34  1
BT006384|BT006384.1 Arabidopsis thaliana At3g55170 gene, complete cds.    46  0.34  1
AU226410|AU226410.1 Arabidopsis thaliana cDNA clone:RAFL14-31-M09, 3'-end.    46  0.34  1
AC119946|AC119946.3 Mus musculus clone RP24-406B22, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.34  1
Z47610|Z47610.1 A. thaliana transcribed sequence; clone TAI212; 5' end; Similar to mRNA for ribosomal protein L35 ; Oriza sativa.    46  0.34  1
AI996565|AI996565.1 701667462 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana cDNA clone 701667462, mRNA sequence.    46  0.34  1
AC140378|AC140378.1 Mus musculus chromosome UNK clone RP24-84M18, WORKING DRAFT SEQUENCE, 11 unordered pieces.    36  0.93  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_741(AE017341|pid:none) Cryptococcus neoformans var. neo...   128   5e-29
AF548325_1(AF548325|pid:none) Branchiostoma belcheri ribosomal p...   115   6e-25
EU958029_1(EU958029|pid:none) Zea mays clone 1664319 60S ribosom...   113   2e-24
AK059262_1(AK059262|pid:none) Oryza sativa Japonica Group cDNA c...   111   6e-24
BT053501_1(BT053501|pid:none) Medicago truncatula clone MTYFP_FQ...   110   1e-23
(P17078) RecName: Full=60S ribosomal protein L35;  &(Q6ZWV7) Rec...   110   1e-23
AC149264_3(AC149264|pid:none) Medicago truncatula clone mth2-78f...   110   1e-23
EU959220_1(EU959220|pid:none) Zea mays clone 212376 60S ribosoma...   110   1e-23
(Q9M3D2) RecName: Full=60S ribosomal protein L35-3;  &AK227739_1...   110   2e-23
(Q9LZ41) RecName: Full=60S ribosomal protein L35-4;  &AK226248_1...   109   2e-23

 psg: 0.56  gvh: 0.45  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSG886 is cyt

>VSG886F.Seq
CATGGCCGAAAAAACTAAAGCTTTTGAACTCAGAACCAAAAACAAGACTCAATTACTTGA
ACACCTCAAGGAACTCAGAACTGAGCTCTCAAGTTTAAGAGTTGCCCAAGTTAAATCACC
AAACCCAAGCAAATTAGCCAAAATCGGTACCGTCCGTAAAGCTATTGCCCGTGTTTTAAC
TGTTTTCAACCAAACTCAAAAGAACCATCTCCGTGCTGTCTATTCTAAAAAATCATCAAG
CAAGATCCCAACTGATCTCCGTTACAAAAAGACTAGAGCCATCAGAAGACGTCTCACCAA
CAAACAATCTAAAGTTGTCACCTTAAGAGTTTCCAAAACTGCCACCAACTTCCCACAAAG
AGTTTTCGCTGTTAAAGCCTAAATTTGCATTTAGATGATTTTAAAAAATAA---------
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