VSG859
Library VS
(Link to library)
Clone ID VSG859
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15330-1
Original site URL
Representative seq. ID VSG859F
(Link to Original site)
Representative DNA sequence
>VSG859 (VSG859Q) /CSM/VS/VSG8-C/VSG859Q.Seq.d/
CATTGATAAATCATTTTTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTC
AATTTTAGAAGATGTTAAAGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGG
CCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGT
TATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTT
AGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGA
AGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGA
TAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTAC
CAAACCAAGCAAAACCGCACGTCATTTCTCATTCTCAAAGCGCACCATCCGTTGCTCCAC
TTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGATTATTAATTATGAAGATCCT
AXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
IDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTV
IIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGID
KYISVCRGCYNSDQNEGNSTKPSKTARHFSFSKRTIRCSTCCKH*s**sfk**llimki-
--


Translated Amino Acid sequence (All Frames)
Frame A:
h**iifsyp*qtklssfpmfnfrrc*rtstkl*cnwy**rpifprrcti**rlgksr*nr
yncrtrwylpkktipish*fsikg*iyykvncrlygllq*srlfktyrrk**yrinwwyr
*iyfrlpwllq**sk*rk*yqtkqnrtsflilkahhpllhll*tlilmii*imiinyedp
---


Frame B:
IDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTV
IIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGID
KYISVCRGCYNSDQNEGNSTKPSKTARHFSFSKRTIRCSTCCKH*s**sfk**llimki-
--


Frame C:
linhf*lpmtnkiiklshvqf*kmlknkhktmm*lvlmkanfsqtlynlvktwqikvkpl
*lph*mvpskenhsnqsli*yqrlnilqs*lpfvwfatmkppfqnvsskvmisn*lvv*i
nifpfavvativikmkeivpnqakphvishsqsapsvaplavninpddhlnndy*l*rs-
--


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG859 (VSG859Q) /CSM/VS/VSG8-C/VSG859Q.Seq.d/ 1072 0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/ 1057 0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/ 1057 0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/ 1057 0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/ 1057 0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/ 1051 0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/ 1049 0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/ 1049 0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/ 1049 0.0
SSK135 (SSK135Q) /CSM/SS/SSK1-B/SSK135Q.Seq.d/ 1043 0.0

own update 2001. 3.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds. 884 0.0 2
AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds. 884 0.0 2
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence. 56 5e-04 1
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.002 2
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence. 50 0.029 1
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence. 50 0.029 1
AZ687741|AZ687741.1 ENTIQ08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 30 1.7 3
BG661802|BG661802.1 kx06e10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence. 44 1.8 1
AL929462|AL929462.12 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-365O6. 44 1.8 1
AC105530|AC105530.4 Rattus norvegicus clone CH230-220G8, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 44 1.8 1
dna update 2003. 8.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom... 159 3e-38
(P04364) RecName: Full=Thymidine kinase; EC=2.7.1.21; ... 159 3e-38
(P68563) RecName: Full=Thymidine kinase; EC=2.7.1.21; ... 159 6e-38
(P04183) RecName: Full=Thymidine kinase, cytosolic; EC=... 158 7e-38
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t... 158 7e-38
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi... 158 1e-37
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene... 158 1e-37
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol... 157 1e-37
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ... 157 1e-37
K02031_1(K02031|pid:none) Variola major virus thymidine kinase g... 157 2e-37
protein update 2009. 3.23
PSORT

psg: 0.85 gvh: 0.26 alm: 0.44 top: 0.43 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.50 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VSG859 is cyt

5' end seq. ID VSG859F
5' end seq.
>VSG859F.Seq
CATTGATAAATCATTTTTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTC
AATTTTAGAAGATGTTAAAGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGG
CCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGT
TATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTT
AGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGA
AGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGA
TAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTAC
CAAACCAAGCAAAACCGCACGTCATTTCTCATTCTCAAAGCGCACCATCCGTTGCTCCAC
TTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGATTATTAATTATGAAGATCCT
A----------
Length of 5' end seq. 541
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -