VSG854
Library VS
(Link to library)
Clone ID VSG854
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13856-1
Original site URL
Representative seq. ID VSG854F
(Link to Original site)
Representative DNA sequence
>VSG854 (VSG854Q) /CSM/VS/VSG8-C/VSG854Q.Seq.d/
AATTTCTCAACATTTAGTGTACCACAAGGATCAGGTACAGGATTTGTTATTCAAAATTCA
ATTCCATGGATTTCAAATGCTGAAGCAATGGATTTCCAAGCATCTGTATCACCAGGTATT
ATTAGTTTAAGTTTTGTTGAACAAATGAATGGTCAAAACACAGTAATTTGTAAATCATTA
CCAGTTTATAATGATAAATTCTTAGTTAAAATGAGTAGTTGTGATAATGTAGTTAGTTTA
TTCAAAGGTGCAACATACGTAACTCAAGCAGTTTATAATAATACTGTCCCATTAAAGAAT
GTTATTGCTAATTTTGGTTTTTATGTTGGTTATCCAACTCCAACAACTACAACTACCACT
GGTGGTGGTTCAACATCCCATGCTACAACCTCTACCACTGGTGGGTGGTTCAACATCTCA
CGTCACAACCTCTACCACTGGTGGGTGGTTCAACAAGTCCATCTACCACTCACGCATCAA
CAACTGGTGGGTGGTCATACAACAGGTCCATCAACATCATCATCATCACATGCAACCTCT
GGTCATCACGGTTCACACTCACAATCTGAATTCTGGTTCACATTCACAATCTGAATCXXX
XXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
NFSTFSVPQGSGTGFVIQNSIPWISNAEAMDFQASVSPGIISLSFVEQMNGQNTVICKSL
PVYNDKFLVKMSSCDNVVSLFKGATYVTQAVYNNTVPLKNVIANFGFYVGYPTPTTTTTT
GGGSTSHATTSTTGGWFNISRHNLYHWWVVQQVHLPLTHQQLVGGHTTGPSTSSSSHATS
GHHGSHSQSEFWFTFTI*---


Translated Amino Acid sequence (All Frames)
Frame A:
NFSTFSVPQGSGTGFVIQNSIPWISNAEAMDFQASVSPGIISLSFVEQMNGQNTVICKSL
PVYNDKFLVKMSSCDNVVSLFKGATYVTQAVYNNTVPLKNVIANFGFYVGYPTPTTTTTT
GGGSTSHATTSTTGGWFNISRHNLYHWWVVQQVHLPLTHQQLVGGHTTGPSTSSSSHATS
GHHGSHSQSEFWFTFTI*---


Frame B:
isqhlvyhkdqvqdllfkiqfhgfqmlkqwiskhlyhqvllv*vllnk*mvktq*fvnhy
qfimins*lk*vvvim*lvyskvqht*lkqfiiilsh*rmlllilvfmlviqlqqlqlpl
vvvqhpmlqplplvggstshvttsttggwfnksiyhsrinnwwvviqqvhqhhhhhmqpl
vitvhthnlnsgshsqse---


Frame C:
flni*cttriryricyskfnsmdfkc*sngfpsicitryy*fkfc*tnewskhsnl*iit
sl***ils*ne*l**cs*fiqrcnirnsssl**ycpikecyc*fwflcwlsnsnnynyhw
wwfnipcynlyhwwvvqhltsqplplvggstspstthasttggwsynrsiniiiitcnlw
ssrftlti*ilvhihnln---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG854 (VSG854Q) /CSM/VS/VSG8-C/VSG854Q.Seq.d/ 1183 0.0
VFI322 (VFI322Q) /CSM/VF/VFI3-A/VFI322Q.Seq.d/ 1120 0.0
VFE445 (VFE445Q) /CSM/VF/VFE4-B/VFE445Q.Seq.d/ 1114 0.0
VFL757 (VFL757Q) /CSM/VF/VFL7-C/VFL757Q.Seq.d/ 1112 0.0
VFL267 (VFL267Q) /CSM/VF/VFL2-C/VFL267Q.Seq.d/ 1108 0.0
VFI233 (VFI233Q) /CSM/VF/VFI2-B/VFI233Q.Seq.d/ 1106 0.0
VFI764 (VFI764Q) /CSM/VF/VFI7-C/VFI764Q.Seq.d/ 1063 0.0
SFH296 (SFH296Q) /CSM/SF/SFH2-D/SFH296Q.Seq.d/ 1025 0.0
VFO658 (VFO658Q) /CSM/VF/VFO6-C/VFO658Q.Seq.d/ 1009 0.0
VHO741 (VHO741Q) /CSM/VH/VHO7-B/VHO741Q.Seq.d/ 1003 0.0

own update 2003. 1. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 38 0.066 4
AC130557|AC130557.5 Rattus norvegicus clone CH230-169O23, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 0.40 2
AC096053|AC096053.6 Rattus norvegicus clone CH230-22H12, WORKING DRAFT SEQUENCE, 1 ordered piece. 38 0.40 2
BQ867841|BQ867841.1 QGD12C10.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD12C10, mRNA sequence. 36 0.42 2
BQ866091|BQ866091.1 QGC7A06.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC7A06, mRNA sequence. 36 0.43 2
AC114460|AC114460.5 Rattus norvegicus clone CH230-51D5, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 42 0.43 2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 0.49 6
BE496632|BE496632.1 Hc_d11_07B11_SKPL Haemonchus contortus d11 mixed adult from David Knox Haemonchus contortus cDNA clone Hc_d11_07B11 5', mRNA sequence. 46 0.50 1
BX549168|BX549168.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse106c08_q1c. 46 0.50 1
AC131073|AC131073.3 Mus musculus clone RP23-404M10, WORKING DRAFT SEQUENCE, 6 unordered pieces. 42 0.54 3
dna update 2003. 8.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM902716_1420(AM902716|pid:none) Bordetella petrii strain DSM 12... 33 4.5
CP000969_1647(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 33 7.6
AE000512_1119(AE000512|pid:none) Thermotoga maritima MSB8, compl... 33 7.6

protein update 2009. 3.23
PSORT

psg: 0.90 gvh: 0.43 alm: 0.43 top: 0.33 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for VSG854 is cyt

5' end seq. ID VSG854F
5' end seq.
>VSG854F.Seq
AATTTCTCAACATTTAGTGTACCACAAGGATCAGGTACAGGATTTGTTATTCAAAATTCA
ATTCCATGGATTTCAAATGCTGAAGCAATGGATTTCCAAGCATCTGTATCACCAGGTATT
ATTAGTTTAAGTTTTGTTGAACAAATGAATGGTCAAAACACAGTAATTTGTAAATCATTA
CCAGTTTATAATGATAAATTCTTAGTTAAAATGAGTAGTTGTGATAATGTAGTTAGTTTA
TTCAAAGGTGCAACATACGTAACTCAAGCAGTTTATAATAATACTGTCCCATTAAAGAAT
GTTATTGCTAATTTTGGTTTTTATGTTGGTTATCCAACTCCAACAACTACAACTACCACT
GGTGGTGGTTCAACATCCCATGCTACAACCTCTACCACTGGTGGGTGGTTCAACATCTCA
CGTCACAACCTCTACCACTGGTGGGTGGTTCAACAAGTCCATCTACCACTCACGCATCAA
CAACTGGTGGGTGGTCATACAACAGGTCCATCAACATCATCATCATCACATGCAACCTCT
GGTCATCACGGTTCACACTCACAATCTGAATTCTGGTTCACATTCACAATCTGAATC---
-------
Length of 5' end seq. 597
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -