VSG848
Library VS
(Link to library)
Clone ID VSG848
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10832-1
Original site URL
Representative seq. ID VSG848F
(Link to Original site)
Representative DNA sequence
>VSG848 (VSG848Q) /CSM/VS/VSG8-B/VSG848Q.Seq.d/
GACGTGCTTATTTAAATCAACCAAAATCACAATTACATAAAGTTCATCCATTAATTGTTT
ATTTACCAAAACCAAAACCAAAGGGTAAAAATTTATTAGAAGAAAAATCAAAAGATGAAC
CAGAAGTCGAATATGATCCAACTGAATTAATTTCATATTGGAAACCAACTTTATCATTAC
ATCTTATTGTTGATCATACAATTTATCCACCTGATTCAATTCCAAAAGAAATAGTATCTT
ATTTTAATATAACAAATGGATTTTATTCGCCAATTATTTATTGTAATGAATTTTGGTTAT
ATAGAGAACATTTAAAACCAGTTAATGAAACAGTTAAACAATTAAGTATTGAAATTAACT
ATTCATCAATGGGTTTATTTAAATGGCAATTACAAATTCAAATGCAAAAATCATTAGATA
TGCAAGAATCATTTGGTGXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
RAYLNQPKSQLHKVHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWKPTLSLH
LIVDHTIYPPDSIPKEIVSYFNITNGFYSPIIYCNEFWLYREHLKPVNETVKQLSIEINY
SSMGLFKWQLQIQMQKSLDMQESFG---


Translated Amino Acid sequence (All Frames)
Frame A:
dvli*inqnhnyikfih*lfiyqnqnqrvkiy*kknqkmnqksnmiqln*fhignqlyhy
illliiqfihliqfqkk*ylili*qmdfirqlfivmnfgyieni*nqlmkqlnn*vlklt
ihqwvylngnykfkcknh*icknhl---


Frame B:
tclfkstkitit*sssinclftktktkg*kfirrkikr*trsri*sn*infiletnfiit
syc*synlst*fnskrnsilf*ynkwilfanyll**ilvi*rtfkts**ns*tiky*n*l
fingfi*maitnsnakiiryariiw---


Frame C:
RAYLNQPKSQLHKVHPLIVYLPKPKPKGKNLLEEKSKDEPEVEYDPTELISYWKPTLSLH
LIVDHTIYPPDSIPKEIVSYFNITNGFYSPIIYCNEFWLYREHLKPVNETVKQLSIEINY
SSMGLFKWQLQIQMQKSLDMQESFG---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG848 (VSG848Q) /CSM/VS/VSG8-B/VSG848Q.Seq.d/ 644 0.0
AFE481 (AFE481Q) /CSM/AF/AFE4-D/AFE481Q.Seq.d/ 644 0.0
VFJ896 (VFJ896Q) /CSM/VF/VFJ8-D/VFJ896Q.Seq.d/ 127 2e-28
VFF189 (VFF189Q) /CSM/VF/VFF1-D/VFF189Q.Seq.d/ 127 2e-28
VFD742 (VFD742Q) /CSM/VF/VFD7-B/VFD742Q.Seq.d/ 127 2e-28
CHL516 (CHL516Q) /CSM/CH/CHL5-A/CHL516Q.Seq.d/ 127 2e-28
CHC843 (CHC843Q) /CSM/CH/CHC8-B/CHC843Q.Seq.d/ 127 2e-28
CFA684 (CFA684Q) /CSM/CF/CFA6-D/CFA684Q.Seq.d/ 127 2e-28
SFA873 (SFA873Q) /CSM/SF/SFA8-D/SFA873Q.Seq.d/ 113 2e-24
VFK187 (VFK187Q) /CSM/VF/VFK1-D/VFK187Q.Seq.d/ 82 8e-15

own update 2003. 7. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ296396|BQ296396.1 san91d12.y2 Gm-c1052 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1052-7080 5', mRNA sequence. 48 0.093 1
BI498436|BI498436.1 sai14a10.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3092 5', mRNA sequence. 48 0.093 1
BF010328|BF010328.1 ss98d09.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-2154 5', mRNA sequence. 48 0.093 1
BQ627504|BQ627504.1 sap32b07.y1 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-2365 5', mRNA sequence. 48 0.093 1
AB104827|AB104827.1 Candida boidinii FGH1 gene for S-formylglutathione hydrolase, complete cds. 48 0.093 1
BG047231|BG047231.1 saa69e08.y1 Gm-c1060 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1060-2127 5', mRNA sequence. 48 0.093 1
CC273753|CC273753.1 CH261-119J17_Sp6.1 CH261 Gallus gallus genomic clone CH261-119J17, DNA sequence. 46 0.37 1
BH600871|BH600871.1 BOHKH12TF BOHK Brassica oleracea genomic clone BOHKH12, DNA sequence. 40 0.94 2
AC096828|AC096828.6 Rattus norvegicus clone CH230-91G16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 1.5 1
AC115825|AC115825.5 Mus musculus clone RP23-444E13, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 44 1.5 1
dna update 2003. 8.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008210_891(AP008210|pid:none) Oryza sativa (japonica cultivar-... 96 5e-19
EU968184_1(EU968184|pid:none) Zea mays clone 316348 unknown mRNA. 95 6e-19
BT038958_1(BT038958|pid:none) Zea mays full-length cDNA clone ZM... 94 1e-18
AK317745_1(AK317745|pid:none) Arabidopsis thaliana AT5G23575 mRN... 92 4e-18
AY064127_1(AY064127|pid:none) Arabidopsis thaliana AT5g08500/MAH... 92 4e-18
AB006697_6(AB006697|pid:none) Arabidopsis thaliana genomic DNA, ... 85 9e-16
AK223553_1(AK223553|pid:none) Homo sapiens mRNA for cleft lip an... 77 2e-13
AK316094_1(AK316094|pid:none) Homo sapiens cDNA, FLJ78993 comple... 77 2e-13
AK304480_1(AK304480|pid:none) Homo sapiens cDNA FLJ58081 complet... 77 2e-13
AY892180_1(AY892180|pid:none) Synthetic construct Homo sapiens c... 77 2e-13
protein update 2009. 3.23
PSORT

psg: 0.62 gvh: 0.35 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: mitochondrial
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VSG848 is cyt

5' end seq. ID VSG848F
5' end seq.
>VSG848F.Seq
GACGTGCTTATTTAAATCAACCAAAATCACAATTACATAAAGTTCATCCATTAATTGTTT
ATTTACCAAAACCAAAACCAAAGGGTAAAAATTTATTAGAAGAAAAATCAAAAGATGAAC
CAGAAGTCGAATATGATCCAACTGAATTAATTTCATATTGGAAACCAACTTTATCATTAC
ATCTTATTGTTGATCATACAATTTATCCACCTGATTCAATTCCAAAAGAAATAGTATCTT
ATTTTAATATAACAAATGGATTTTATTCGCCAATTATTTATTGTAATGAATTTTGGTTAT
ATAGAGAACATTTAAAACCAGTTAATGAAACAGTTAAACAATTAAGTATTGAAATTAACT
ATTCATCAATGGGTTTATTTAAATGGCAATTACAAATTCAAATGCAAAAATCATTAGATA
TGCAAGAATCATTTGGTG----------
Length of 5' end seq. 438
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -