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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG832
Library VS
(Link to library)
Clone ID VSG832
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06124-1
Original site URL
Representative seq. ID VSG832F
(Link to Original site)
Representative DNA sequence 
>VSG832 (VSG832Q) /CSM/VS/VSG8-B/VSG832Q.Seq.d/
GTGATTTCCAAGGTTATTCCAACCAATTGGACGTCCATCTTAGACGTGAACAATCTGAAC
CAGCTATCGATGATGCAATGGCATTCTATCAAACTTTAACCTCCATCGTTAGTGATCCAG
TCTTTAAGAATGGTGAATTCACTTATTTAAATTGCACAAATGATCAAGAGAGTTGGAATT
TAGTTGCCTACAAATGGACATACCAAAATGAACGTAGATTATGTGTTTTGAATTTCTCTG
ACCAACAAGGTACTGGTAATATTATCTTGGATGATGCTGAACCAATGAATGGTAATGAAA
CTATCCCTGTCACTGATTTACTTTCCAATACTACCTATTATCGTTCTTCTGAACAAATGA
GAACAACTGGTCTCTATGTAATTATAAACTCTTGGTATGGTCAAATTTTTAAATATTAAA
ATAAATAAATAGATTTTAATTTGAAAATAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
DFQGYSNQLDVHLRREQSEPAIDDAMAFYQTLTSIVSDPVFKNGEFTYLNCTNDQESWNL
VAYKWTYQNERRLCVLNFSDQQGTGNIILDDAEPMNGNETIPVTDLLSNTTYYRSSEQMR
TTGLYVIINSWYGQIFKY*nk*idfnlkikk---
Translated Amino Acid sequence (All Frames) 
Frame A:
viskviptnwtsildvnnlnqlsmmqwhsikl*ppslviqslrmvnsli*iaqmikrvgi
*lptnghtkmnvdyvf*isltnkvlvilswmmlnq*mvmklslsliyfpilpiivllnk*
eqlvsm*l*tlgmvkflnikink*ili*k*kk---


Frame B:
*fprlfqpigrps*t*ti*tsyr*cngilsnfnlhr**ssl*ew*ihlfklhk*srelef
sclqmdipk*t*imcfefl*ptryw*yylg*c*tnew**nypch*ftfqyyllsff*tne
nnwslcnykllvwsnf*ilk*inrf*fenkkk---


Frame C:
DFQGYSNQLDVHLRREQSEPAIDDAMAFYQTLTSIVSDPVFKNGEFTYLNCTNDQESWNL
VAYKWTYQNERRLCVLNFSDQQGTGNIILDDAEPMNGNETIPVTDLLSNTTYYRSSEQMR
TTGLYVIINSWYGQIFKY*nk*idfnlkikk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG832 (VSG832Q) /CSM/VS/VSG8-B/VSG832Q.Seq.d/                        888   0.0
VFE728 (VFE728Q) /CSM/VF/VFE7-B/VFE728Q.Seq.d/                        603   e-171
SSG389 (SSG389Q) /CSM/SS/SSG3-D/SSG389Q.Seq.d/                         44   0.002
SSM426 (SSM426Q) /CSM/SS/SSM4-B/SSM426Q.Seq.d/                         42   0.007
VSK406 (VSK406Q) /CSM/VS/VSK4-A/VSK406Q.Seq.d/                         40   0.029
VSG406 (VSG406Q) /CSM/VS/VSG4-A/VSG406Q.Seq.d/                         40   0.029
VSG389 (VSG389Q) /CSM/VS/VSG3-D/VSG389Q.Seq.d/                         40   0.029
VSF709 (VSF709Q) /CSM/VS/VSF7-A/VSF709Q.Seq.d/                         40   0.029
VSF295 (VSF295Q) /CSM/VS/VSF2-D/VSF295Q.Seq.d/                         40   0.029
VSD289 (VSD289Q) /CSM/VS/VSD2-D/VSD289Q.Seq.d/                         40   0.029
own update 2003.10.28
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX131276|BX131276.1 Danio rerio genomic clone DKEY-89N13, genomic survey sequence.    48  0.005  2
BX511125|BX511125.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-88H6.    36  0.026  5
AX705387|AX705387.1 Sequence 56 from Patent WO03014388.           50  0.044  2
AX705365|AX705365.1 Sequence 34 from Patent WO03014388.           50  0.044  2
AX598937|AX598937.1 Sequence 277 from Patent WO02077272.          50  0.044  2
AX598791|AX598791.1 Sequence 131 from Patent WO02077272.          50  0.044  2
AX345294|AX345294.1 Sequence 365 from Patent WO0200928.           50  0.060  2
AX251057|AX251057.1 Sequence 25 from Patent WO0168912.            50  0.060  2
BX323009|BX323009.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.082  5
AL954767|AL954767.10 Zebrafish DNA sequence from clone CH211-225B14 in linkage group 21.    36  0.14  3
dna update 2003. 8.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000473_4452(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    62   6e-09
CP000360_4074(CP000360|pid:none) Acidobacteria bacterium Ellin34...    61   1e-08
CP000562_384(CP000562|pid:none) Methanoculleus marisnigri JR1, c...    60   2e-08
CP001287_2033(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    58   1e-07
AM236080_62(AM236080|pid:none) Rhizobium leguminosarum bv. vicia...    57   2e-07
AM419455_1(AM419455|pid:none) Eudiplodinium maggii mRNA for amyl...    46   3e-04
AE017308_63(AE017308|pid:none) Mycoplasma mobile 163K complete g...    35   0.59
DQ489736_665(DQ489736|pid:none) Leuconostoc citreum KM20, comple...    35   1.0
DQ417354_1(DQ417354|pid:none) Clostridium botulinum neurotoxin t...    34   1.3
EF028395_1(EF028395|pid:none) Clostridium botulinum strain B162 ...    34   1.3
protein update 2009. 3.23
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSG832 is cyt
5' end seq. ID VSG832F
5' end seq. 
>VSG832F.Seq
GTGATTTCCAAGGTTATTCCAACCAATTGGACGTCCATCTTAGACGTGAACAATCTGAAC
CAGCTATCGATGATGCAATGGCATTCTATCAAACTTTAACCTCCATCGTTAGTGATCCAG
TCTTTAAGAATGGTGAATTCACTTATTTAAATTGCACAAATGATCAAGAGAGTTGGAATT
TAGTTGCCTACAAATGGACATACCAAAATGAACGTAGATTATGTGTTTTGAATTTCTCTG
ACCAACAAGGTACTGGTAATATTATCTTGGATGATGCTGAACCAATGAATGGTAATGAAA
CTATCCCTGTCACTGATTTACTTTCCAATACTACCTATTATCGTTCTTCTGAACAAATGA
GAACAACTGGTCTCTATGTAATTATAAACTCTTGGTATGGTCAAATTTTTAAATATTAAA
ATAAATAAATAGATTTTAATTTGAAAATAAAAAAAAAA----------
Length of 5' end seq. 458
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -