>VSG826 (VSG826Q) /CSM/VS/VSG8-B/VSG826Q.Seq.d/
GAAACTTGTGTAATCATTGATCAAACAGAATGTTATTTAGCTGTTGTTTGTGATATCAAT
GATAGTGATAGAAATAAACGCTTGGCAATTGCTTTAGGTGTAATTTTACCAATTTTAGCT
TTATTAGTTGGGGTTTTTGCTTTCATTATCTATAAAAGATATAAAAATAAAAAAGATGGT
TATTTACCAGCAAGTACAATAGAAATTAATTAGTTTAAACAGGAAAAAAAAAATAAAAAA
ATAAAAAATNTATTGAAAAAAAAAAANGGAAAAAAAAAAXXXXXXXXXX

ETCVIIDQTECYLAVVCDINDSDRNKRLAIALGVILPILALLVGVFAFIIYKRYKNKKDG
YLPASTIEIN*fkqekknkkiknxlkkkxgkk---

Frame A:
ETCVIIDQTECYLAVVCDINDSDRNKRLAIALGVILPILALLVGVFAFIIYKRYKNKKDG
YLPASTIEIN*fkqekknkkiknxlkkkxgkk---


Frame B:
klv*slikqnvi*llfvismivieinawqll*v*fyqf*ly*lgfllslsikdikikkmv
iyqqvq*klislnrkkkikk*kxy*kkkxekk---


Frame C:
nlcnh*snrmlfsccl*yq****k*tlgncfrcnftnfsfiswgfcfhyl*ki*k*krwl
ftskynrn*lv*tgkkk*knkkxiekkkxkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG826 (VSG826Q) /CSM/VS/VSG8-B/VSG826Q.Seq.d/                        371   e-102
VSJ101 (VSJ101Q) /CSM/VS/VSJ1-A/VSJ101Q.Seq.d/                        307   5e-83
VHN628 (VHN628Q) /CSM/VH/VHN6-B/VHN628Q.Seq.d/                         36   0.28
VHN271 (VHN271Q) /CSM/VH/VHN2-C/VHN271Q.Seq.d/                         36   0.28
VHJ520 (VHJ520Q) /CSM/VH/VHJ5-A/VHJ520Q.Seq.d/                         36   0.28
VHH825 (VHH825Q) /CSM/VH/VHH8-B/VHH825Q.Seq.d/                         36   0.28
VHH642 (VHH642Q) /CSM/VH/VHH6-B/VHH642Q.Seq.d/                         36   0.28
VHG807 (VHG807Q) /CSM/VH/VHG8-A/VHG807Q.Seq.d/                         36   0.28
VHF747 (VHF747Q) /CSM/VH/VHF7-B/VHF747Q.Seq.d/                         36   0.28
VHF731 (VHF731Q) /CSM/VH/VHF7-B/VHF731Q.Seq.d/                         36   0.28

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC121337|AC121337.7 Homo sapiens 12 BAC RP11-96H19 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  0.59  3
AL662922|AL662922.9 Mouse DNA sequence from clone RP23-195K1 on chromosome X.    44  0.91  1
AC100983|AC100983.1 Mus musculus clone RP23-76F21, LOW-PASS SEQUENCE SAMPLING.    44  0.91  1
AC127672|AC127672.6 Rattus norvegicus clone CH230-4B7, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  3.6  1
N62920|N62920.1 yy68a11.s1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:278684 3' similar to contains element L1 repetitive element ;, mRNA sequence.    42  3.6  1
AC095116|AC095116.6 Rattus norvegicus clone CH230-7L15, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  3.6  1
BX112397|BX112397.1 RZPD Homo sapiens cDNA clone IMAGp998A21616 = IMAGE:278684 5' EST.    42  3.6  1
AL136218|AL136218.26 Human DNA sequence from clone RP11-101D11 on chromosome 13.    38  3.7  3
AC113132|AC113132.3 Homo sapiens chromosome 18, clone RP11-433F3, complete sequence.    36  5.2  6
BX212805|BX212805.1 Danio rerio genomic clone DKEY-258L20, genomic survey sequence.    36  5.6  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE005174_3560(AE005174|pid:none) Escherichia coli O157:H7 EDL933...    36   0.34
(P27303) RecName: Full=Multidrug resistance protein A;  &AP00904...    36   0.34
CU928158_361(CU928158|pid:none) Escherichia fergusonii ATCC 3546...    36   0.34
CP000034_2680(CP000034|pid:none) Shigella dysenteriae Sd197, com...    36   0.34
CP001063_2740(CP001063|pid:none) Shigella boydii CDC 3083-94, co...    36   0.34
AE014075_3163(AE014075|pid:none) Escherichia coli CFT073, comple...    36   0.34
AY150811_1(AY150811|pid:none) Squalus acanthias MHC class I anti...    34   1.3
AC116979_55(AC116979|pid:none) Dictyostelium discoideum chromoso...    34   1.3
(Q8BGD4) RecName: Full=Solute carrier organic anion transporter ...    33   2.2
AB075368_1(AB075368|pid:none) Ptychodera flava Pf1Cad mRNA for P...    33   2.9

 psg: 0.75  gvh: 0.75  alm: 0.12  top: 0.80  tms: 0.07  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.41  leu: 0.14  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSG826 is nuc

>VSG826F.Seq
GAAACTTGTGTAATCATTGATCAAACAGAATGTTATTTAGCTGTTGTTTGTGATATCAAT
GATAGTGATAGAAATAAACGCTTGGCAATTGCTTTAGGTGTAATTTTACCAATTTTAGCT
TTATTAGTTGGGGTTTTTGCTTTCATTATCTATAAAAGATATAAAAATAAAAAAGATGGT
TATTTACCAGCAAGTACAATAGAAATTAATTAGTTTAAACAGGAAAAAAAAAATAAAAAA
ATAAAAAATNTATTGAAAAAAAAAAANGGAAAAAAAAAA----------