>VSG755 (VSG755Q) /CSM/VS/VSG7-C/VSG755Q.Seq.d/
CACACACTTAATCATATTTATATATATATTTTTTAATTAATAAAAAATCATATATATATC
TTATAAATTTGCTTTCATACAAATTAAAACCGTTATTATTAAATAACTTACATCATATAA
ATTTATACTTTTAGTATATCTTTTTCACTCTCATCTTTTTTTATTCCCCATTTAAAAAAT
TCAAATTTAAATTGATAATTAATTAAAATTAAATTCAAAAAATGATTGTAACTCAAATTG
TTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTGAGCTCATTA
GAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAATTAAATATAGTAAAG
ATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACAAACAAAATT
ATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAAACTATGATG
TAATTGGTATTGATGAAGGCCAATTTTTCXXXXXXXXXX

ht*sylyiyflinkksyiylinllsyklkplllnnlhhinlyf*yifftliffyspfkkf
kfkliin*n*IQKMIVTQIVGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKD
TRYNDNIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQF---

Frame A:
htlnhiyiyif*liknhiyil*icfhtn*nryy*ityii*iytfsisfslssffiphlkn
snln**likikfkk*l*lkllvkfksslvqclaerplssleelkdlilqtknay*lnivk
ildititlinhf*lpmtnkiiklshvqf*kmlknkhktmm*lvlmkanf---


Frame B:
thliifiyiffn**kiiyisykfafiqiktviik*ltsykfillvylfhshlflfpi*ki
qi*idn*lklnskndcnsncw*nsshlwsnv*rkdh*ah*kn*ki*fckqkmlin*i**r
y*i*r*h**iifsyp*qtklssfpmfnfrrc*rtstkl*cnwy**rpif---


Frame C:
ht*sylyiyflinkksyiylinllsyklkplllnnlhhinlyf*yifftliffyspfkkf
kfkliin*n*IQKMIVTQIVGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKD
TRYNDNIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQF---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ693 (VSJ693Q) /CSM/VS/VSJ6-D/VSJ693Q.Seq.d/                        511   e-144
VSI149 (VSI149Q) /CSM/VS/VSI1-C/VSI149Q.Seq.d/                        511   e-144
VSG755 (VSG755Q) /CSM/VS/VSG7-C/VSG755Q.Seq.d/                        511   e-144
VHQ109 (VHQ109Q) /CSM/VH/VHQ1-A/VHQ109Q.Seq.d/                        511   e-144
VFL501 (VFL501Q) /CSM/VF/VFL5-A/VFL501Q.Seq.d/                        511   e-144
VFK774 (VFK774Q) /CSM/VF/VFK7-D/VFK774Q.Seq.d/                        511   e-144
VFK621 (VFK621Q) /CSM/VF/VFK6-A/VFK621Q.Seq.d/                        511   e-144
VFJ847 (VFJ847Q) /CSM/VF/VFJ8-B/VFJ847Q.Seq.d/                        511   e-144
VFI730 (VFI730Q) /CSM/VF/VFI7-B/VFI730Q.Seq.d/                        511   e-144
VFI582 (VFI582Q) /CSM/VF/VFI5-D/VFI582Q.Seq.d/                        511   e-144

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.   511  0.0  2
AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.   511  0.0  2
BG661802|BG661802.1 kx06e10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence.    44  0.001  2
BQ089799|BQ089799.1 rc53b07.y2 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence.    40  0.014  2
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.027  1
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.027  1
AP006148|AP006148.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 2, clone:LjT41D09, TM0304.    40  0.047  2
AC027323|AC027323.5 Homo sapiens chromosome 5 clone CTD-2034A10, complete sequence.    46  0.057  2
AC136974|AC136974.11 Medicago truncatula clone mth2-22e9, complete sequence.    36  0.25  4
AC020749|AC020749.2 Homo sapiens chromosome 3p clone RP11-1047F22, WORKING DRAFT SEQUENCE, 11 unordered pieces.    40  0.38  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...   105   6e-22
K02581_1(K02581|pid:none) Human thymidine kinase mRNA, complete ...   104   1e-21
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   104   1e-21
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   104   1e-21
(P27158) RecName: Full=Thymidine kinase, cytosolic;          EC=...   103   2e-21
(P09768) RecName: Full=Thymidine kinase, cytosolic;          EC=...   103   2e-21
AY466383_1(AY466383|pid:none) Entamoeba histolytica thymidine ki...   103   2e-21
AB451268_1(AB451268|pid:none) Homo sapiens TK1 mRNA for thymidin...   102   4e-21
(P04184) RecName: Full=Thymidine kinase, cytosolic;          EC=...   102   5e-21
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...   101   9e-21

 psg: 0.89  gvh: 0.34  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSG755 is cyt

>VSG755F.Seq
CACACACTTAATCATATTTATATATATATTTTTTAATTAATAAAAAATCATATATATATC
TTATAAATTTGCTTTCATACAAATTAAAACCGTTATTATTAAATAACTTACATCATATAA
ATTTATACTTTTAGTATATCTTTTTCACTCTCATCTTTTTTTATTCCCCATTTAAAAAAT
TCAAATTTAAATTGATAATTAATTAAAATTAAATTCAAAAAATGATTGTAACTCAAATTG
TTGGTAAAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTGAGCTCATTA
GAAGAATTAAAAGATTTAATTTTGCAAACAAAAAATGCTTATTAATTAAATATAGTAAAG
ATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACAAACAAAATT
ATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAAACTATGATG
TAATTGGTATTGATGAAGGCCAATTTTTC----------