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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA578
Library AH
(Link to library)
Clone ID AHA578
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AHA578P
(Link to Original site)
Representative DNA sequence 
>AHA578 (AHA578Q) /CSM/AH/AHA5-D/AHA578Q.Seq.d/
ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTC
ACTTGAATTGCAGCCTACTAGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC
TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAATTGTTTGACTTTTTTTTTTAAG
TAAAGAAATAANCAAAAAAAAAGAAATAGAAAAAAAAAAXXXXXXXXXXATAGTTTCCCA
AATGTTACAAAAGTAATTAAAGATCATGGTGCAAATATCATTGGTTTATTAGAATCTGAT
CTTTCAAGAGTTATGACTTCAAATAGAGATTTAGTTGAATGGATTGCAACTGAATTACAT
ATGTATAGTGATTTTGGACCAGAACCATCAAGAAATACATGGGGTTGTGCATTATTAACA
ATTTTCCCAATCATTTCATCAGATAGAGTTATTTTACCATCACCAGAAGGTGAACTTGCA
TGTCTTATCGATGCAGTATTATTAATTGATGAAACACCAGTCAATGTTATTGTTACTCAT
TTTGGTAATACTGAAGATGTTTTAGATAGAAAATTACAAACTGAAGGTGCTGCTGCAATC
GTTAAAAAGAACGCTGATATGCCAATCATTTTCCTTAGTTATATCACAACCAAAGTTAAC
ACTGAAAACTATAATACTTTAAGAGCATCAGGTTTAGATGATACCACAAACGAAGGTCGT
TATTGTCAATATATCTTTTATAAAAATTTACAACTTAACAAATTCCAAAGATTCTCAAGT
TTCGATATCTCTGATACTGAACAACAAGTTGCATCTTTTTCTGTTATAAAAGAAAATAAA
CAACAACAACAACAAACTGAACAACAAACTCAACAATAATTAAGTAAAAAATATAAACAA
TAAAAGAATTAAAAAAATTAAAATAAAATTTTTTTAAATAAAATTAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
*tvntstpksmktvancdnslelqptrivemlnahddigpfglgvilg*ewsiv*LFFLS
KEIXKKKEIEKK---

---SFPNVTKVIKDHGANIIGLLESDLSRVMTSNRDLVEWIATELHMYSDFGPEPSRNTW
GCALLTIFPIISSDRVILPSPEGELACLIDAVLLIDETPVNVIVTHFGNTEDVLDRKLQT
EGAAAIVKKNADMPIIFLSYITTKVNTENYNTLRASGLDDTTNEGRYCQYIFYKNLQLNK
FQRFSSFDISDTEQQVASFSVIKENKQQQQQTEQQTQQ*lskkykq*kn*kn*nkiflnk
ir
Translated Amino Acid sequence (All Frames) 
Frame A:
ingeylds*idedrsklr*ft*iaay*ds*nvert**hrsfrircytwvrvvncltfffk
*rnxqkkrnrkkk---

---ivsqmlqk*lkimvqislvy*nlifqel*lqiei*lnglqlnyicivildqnhqeih
gvvhy*qfsqsfhqielfyhhqkvnlhvlsmqyy*lmkhqsmllllilvilkmf*ienyk
lkvllqslkrtlicqsfslvisqpkltlktiil*ehqv*mipqtkvvivnisfikiynlt
nskdsqvsislilnnklhlfll*kkinnnnnklnnklnnn*vkninnkrikkikikff*i
kl

Frame B:
*tvntstpksmktvancdnslelqptrivemlnahddigpfglgvilg*ewsiv*LFFLS
KEIXKKKEIEKK---

---*fpkcyksn*rswckyhwfiri*sfksydfk*rfs*mdcn*ityv**fwtrtikkym
glciinnfpnhfir*syftitrr*tcmsyrcsiin**ntsqcycysfw*y*rcfr*kitn
*rcccnr*ker*yanhfp*lyhnqs*h*kl*yfksirfr*yhkrrsllsiyll*kftt*q
ipkilkfryl*y*ttsciffcykrk*tttttn*ttnstiik*ki*tikelkklk*nffk*
n*

Frame C:
kr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesgqlfdfff*v
kk*xkkkk*kkk---

---SFPNVTKVIKDHGANIIGLLESDLSRVMTSNRDLVEWIATELHMYSDFGPEPSRNTW
GCALLTIFPIISSDRVILPSPEGELACLIDAVLLIDETPVNVIVTHFGNTEDVLDRKLQT
EGAAAIVKKNADMPIIFLSYITTKVNTENYNTLRASGLDDTTNEGRYCQYIFYKNLQLNK
FQRFSSFDISDTEQQVASFSVIKENKQQQQQTEQQTQQ*lskkykq*kn*kn*nkiflnk
ir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHQ874 (AHQ874Q) /CSM/AH/AHQ8-D/AHQ874Q.Seq.d/                       1205   0.0
VHQ376 (VHQ376Q) /CSM/VH/VHQ3-D/VHQ376Q.Seq.d/                       1205   0.0
VHQ330 (VHQ330Q) /CSM/VH/VHQ3-B/VHQ330Q.Seq.d/                       1205   0.0
VHP281 (VHP281Q) /CSM/VH/VHP2-D/VHP281Q.Seq.d/                       1205   0.0
VHK570 (VHK570Q) /CSM/VH/VHK5-C/VHK570Q.Seq.d/                       1205   0.0
VHJ124 (VHJ124Q) /CSM/VH/VHJ1-A/VHJ124Q.Seq.d/                       1205   0.0
VHI165 (VHI165Q) /CSM/VH/VHI1-C/VHI165Q.Seq.d/                       1205   0.0
VHE320 (VHE320Q) /CSM/VH/VHE3-A/VHE320Q.Seq.d/                       1205   0.0
VHD494 (VHD494Q) /CSM/VH/VHD4-D/VHD494Q.Seq.d/                       1205   0.0
VHC807 (VHC807Q) /CSM/VH/VHC8-A/VHC807Q.Seq.d/                       1205   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   946   0.0    13
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      301   1e-77  1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   301   1e-77  1
V00192|V00192.1 Dictyostelium discoideum 5.8S ribosomal RNA.      285   6e-73  1
AF219102|AF219102.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   258   1e-64  1
AF219103|AF219103.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   258   1e-64  1
AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   256   5e-64  1
AF219107|AF219107.1 Polysphondylium violaceum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   252   8e-63  1
AY330646|AY330646.1 Dictyostelium clavatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   250   3e-62  1
AF351197|AF351197.1 Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   250   3e-62  1
dna update 2004. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_23(AC116305|pid:none) Dictyostelium discoideum chromoso...   407   e-112
CR382121_463(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   165   2e-39
CR380958_339(CR380958|pid:none) Candida glabrata strain CBS138 c...   159   2e-37
CR382131_1390(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   156   1e-36
S19427(S19427)probable membrane protein YCR017c - yeast (Sacchar...   155   2e-36
AP007151_1087(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...   154   4e-36
(P25618) RecName: Full=Protein CWH43; AltName: Full=Calcofluor w...   154   5e-36
FM992695_119(FM992695|pid:none) Candida dubliniensis CD36 chromo...   154   5e-36
AM989984_44(AM989984|pid:none) Zygosaccharomyces rouxii strain C...   152   1e-35
CP000502_273(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...   150   6e-35
protein update 2009. 4.27
PSORT 

 psg: 0.39  gvh: 0.45  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AHA578 is nuc
5' end seq. ID AHA578F
5' end seq. 
>AHA578F.Seq
ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTC
ACTTGAATTGCAGCCTACTAGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC
TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAATTGTTTGACTTTTTTTTTTAAG
TAAAGAAATAANCAAAAAAAAAGAAATAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 229
3' end seq. ID AHA578Z
3' end seq. 
>AHA578Z.Seq
NNNNNNNNNNATAGTTTCCCAAATGTTACAAAAGTAATTAAAGATCATGGTGCAAATATC
ATTGGTTTATTAGAATCTGATCTTTCAAGAGTTATGACTTCAAATAGAGATTTAGTTGAA
TGGATTGCAACTGAATTACATATGTATAGTGATTTTGGACCAGAACCATCAAGAAATACA
TGGGGTTGTGCATTATTAACAATTTTCCCAATCATTTCATCAGATAGAGTTATTTTACCA
TCACCAGAAGGTGAACTTGCATGTCTTATCGATGCAGTATTATTAATTGATGAAACACCA
GTCAATGTTATTGTTACTCATTTTGGTAATACTGAAGATGTTTTAGATAGAAAATTACAA
ACTGAAGGTGCTGCTGCAATCGTTAAAAAGAACGCTGATATGCCAATCATTTTCCTTAGT
TATATCACAACCAAAGTTAACACTGAAAACTATAATACTTTAAGAGCATCAGGTTTAGAT
GATACCACAAACGAAGGTCGTTATTGTCAATATATCTTTTATAAAAATTTACAACTTAAC
AAATTCCAAAGATTCTCAAGTTTCGATATCTCTGATACTGAACAACAAGTTGCATCTTTT
TCTGTTATAAAAGAAAATAAACAACAACAACAACAAACTGAACAACAAACTCAACAATAA
TTAAGTAAAAAATATAAACAATAAAAGAATTAAAAAAATTAAAATAAAATTTTTTTAAAT
AAAATTAGA
Length of 3' end seq. 729
Connected seq. ID AHA578P
Connected seq. 
>AHA578P.Seq
ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTC
ACTTGAATTGCAGCCTACTAGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC
TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAATTGTTTGACTTTTTTTTTTAAG
TAAAGAAATAANCAAAAAAAAAGAAATAGAAAAAAAAAA----------ATAGTTTCCCA
AATGTTACAAAAGTAATTAAAGATCATGGTGCAAATATCATTGGTTTATTAGAATCTGAT
CTTTCAAGAGTTATGACTTCAAATAGAGATTTAGTTGAATGGATTGCAACTGAATTACAT
ATGTATAGTGATTTTGGACCAGAACCATCAAGAAATACATGGGGTTGTGCATTATTAACA
ATTTTCCCAATCATTTCATCAGATAGAGTTATTTTACCATCACCAGAAGGTGAACTTGCA
TGTCTTATCGATGCAGTATTATTAATTGATGAAACACCAGTCAATGTTATTGTTACTCAT
TTTGGTAATACTGAAGATGTTTTAGATAGAAAATTACAAACTGAAGGTGCTGCTGCAATC
GTTAAAAAGAACGCTGATATGCCAATCATTTTCCTTAGTTATATCACAACCAAAGTTAAC
ACTGAAAACTATAATACTTTAAGAGCATCAGGTTTAGATGATACCACAAACGAAGGTCGT
TATTGTCAATATATCTTTTATAAAAATTTACAACTTAACAAATTCCAAAGATTCTCAAGT
TTCGATATCTCTGATACTGAACAACAAGTTGCATCTTTTTCTGTTATAAAAGAAAATAAA
CAACAACAACAACAAACTGAACAACAAACTCAACAATAATTAAGTAAAAAATATAAACAA
TAAAAGAATTAAAAAAATTAAAATAAAATTTTTTTAAATAAAATTAGA
Length of connected seq. 938
Full length Seq ID -
Full length Seq. -
Length of full length seq. -