NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG691
Library VS
(Link to library)
Clone ID VSG691
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSG691F
(Link to Original site)
Representative DNA sequence 
>VSG691 (VSG691Q) /CSM/VS/VSG6-D/VSG691Q.Seq.d/
GAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTT
AAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCC
GTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGT
GGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTC
AGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACA
CTGGTTTTAAAAAATAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
EVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAG
GAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
EVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAG
GAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkkk---


Frame B:
kselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtvavkf*lv
vlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kikk---


Frame C:
srscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rlp*sfsww
cldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG691 (VSG691Q) /CSM/VS/VSG6-D/VSG691Q.Seq.d/                        611   e-174
VSK445 (VSK445Q) /CSM/VS/VSK4-B/VSK445Q.Seq.d/                        609   e-173
VSK444 (VSK444Q) /CSM/VS/VSK4-B/VSK444Q.Seq.d/                        609   e-173
VSK161 (VSK161Q) /CSM/VS/VSK1-C/VSK161Q.Seq.d/                        609   e-173
VSK116 (VSK116Q) /CSM/VS/VSK1-A/VSK116Q.Seq.d/                        609   e-173
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        609   e-173
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        609   e-173
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        609   e-173
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        609   e-173
VSH738 (VSH738Q) /CSM/VS/VSH7-B/VSH738Q.Seq.d/                        609   e-173
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  2e-13  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  3e-13  2
BI742435|BI742435.1 kt50h12.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;contains element MER8 repetitive element ;, mRNA sequence.    42  1e-11  4
BI323490|BI323490.1 kt71h07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;, mRNA sequence.    42  1e-11  4
dna update 2003. 8.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   171   5e-42
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   136   2e-31
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   136   2e-31
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   135   4e-31
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   134   7e-31
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   134   1e-30
AM049131_1(AM049131|pid:none) Cicindela littoralis mRNA for ribo...   134   1e-30
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   134   1e-30
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   133   2e-30
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   133   2e-30
protein update 2009. 3.23
PSORT 

 psg: 0.55  gvh: 0.34  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSG691 is nuc
5' end seq. ID VSG691F
5' end seq. 
>VSG691F.Seq
GAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTT
AAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCC
GTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGT
GGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTC
AGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACA
CTGGTTTTAAAAAATAAAAAAAAAA----------
Length of 5' end seq. 325
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -