>VSG688 (VSG688Q) /CSM/VS/VSG6-D/VSG688Q.Seq.d/
GNTGGTACTGACGTTTCACAAGTAAAATTACTAGGTCCATCTGCACCAAATACTGATGGT
GGTCAATTGAAATTAACATTGCCATTTGATTCTTCAACTGTTTTAACTTCAACCAAATTT
GTCGGAGGTGGTTCACAAGCTGTTGCACCCAATTCACCAACAAGTTTTTATATTGGGCAA
ACTTTAATTGATATTACATCTGAAAAGTCAAATTATGCCAATGAACAATTTTACATAACC
GTTGCAACATTTACCGAAGGAGCACAACAACCAGTTAGTCGTTCCCAATTGCTTTATACC
GGTTCTTCAAATACTCCAAACTCTGGTGGTGGTACAAATCCAAATGGTTCAAGTGATGTT
CCTCCAACTGTCGGTCCAATCTCCTCATCAGATTCTACAAATTCCAATTCTAGCTCCACT
GATACAGCTTCATCATCACCATCATCATCACCATCTTCATCACCCTCACCAAATGATTCC
GAAGGAAAGTGATAATGATTCATTACAAACCGATTCTACTGTATTGATCCAGXXXXXXXX
XX

XGTDVSQVKLLGPSAPNTDGGQLKLTLPFDSSTVLTSTKFVGGGSQAVAPNSPTSFYIGQ
TLIDITSEKSNYANEQFYITVATFTEGAQQPVSRSQLLYTGSSNTPNSGGGTNPNGSSDV
PPTVGPISSSDSTNSNSSSTDTASSSPSSSPSSSPSPNDSEGK***fitnrfycidp---

Frame A:
XGTDVSQVKLLGPSAPNTDGGQLKLTLPFDSSTVLTSTKFVGGGSQAVAPNSPTSFYIGQ
TLIDITSEKSNYANEQFYITVATFTEGAQQPVSRSQLLYTGSSNTPNSGGGTNPNGSSDV
PPTVGPISSSDSTNSNSSSTDTASSSPSSSPSSSPSPNDSEGK***fitnrfycidp---


Frame B:
xvltfhk*ny*vhlhqilmvvn*n*hchlilqlf*lqpnlsevvhkllhpihqqvfilgk
l*lilhlksqimpmnnft*plqhlpkehnnqlvvpncfipvlqilqtlvvvqiqmvqvmf
lqlsvqsphqilqipilapliqlhhhhhhhhlhhphqmipkesdndslqtdstvli---


Frame C:
wy*rftskitrsictky*wwsieiniai*ffncfnfnqicrrwftscctqftnkflywan
fn*yyi*kvklcq*tilhnrcniyrrsttts*sfpialyrffkysklwwwykskwfk*cs
sncrsnllirfykfqf*lh*ysfiitiiitifitltk*frrkvimihykpilly*s---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG688 (VSG688Q) /CSM/VS/VSG6-D/VSG688Q.Seq.d/                        846   0.0
SLH683 (SLH683Q) /CSM/SL/SLH6-D/SLH683Q.Seq.d/                        450   e-125
VSG346 (VSG346Q) /CSM/VS/VSG3-B/VSG346Q.Seq.d/                        341   7e-93
VSJ810 (VSJ810Q) /CSM/VS/VSJ8-A/VSJ810Q.Seq.d/                         58   1e-07
VHL414 (VHL414Q) /CSM/VH/VHL4-A/VHL414Q.Seq.d/                         38   0.13
VHA175 (VHA175Q) /CSM/VH/VHA1-D/VHA175Q.Seq.d/                         38   0.13
VFM679 (VFM679Q) /CSM/VF/VFM6-D/VFM679Q.Seq.d/                         38   0.13
AHG836 (AHG836Q) /CSM/AH/AHG8-B/AHG836Q.Seq.d/                         38   0.13
AFG504 (AFG504Q) /CSM/AF/AFG5-A/AFG504Q.Seq.d/                         38   0.13
FC-AJ06 (FC-AJ06Q) /CSM/FC/FC-AJ/FC-AJ06Q.Seq.d/                       36   0.53

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC010671|AC010671.8 Drosophila melanogaster, chromosome X, region 18E-18F, BAC clone BACR33M08, complete sequence.    38  0.069  4
BX232169|BX232169.1 Danio rerio genomic clone DKEY-56D07, genomic survey sequence.    48  0.11  1
BI891510|BI891510.1 ZF637-3-000765 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_15B10;MPMGp637B1015 5', mRNA sequence.    48  0.11  1
BI984168|BI984168.1 fu09a12.y3 Campbell zebrafish ovary Danio rerio cDNA clone 5304503 5' similar to TR:O94927 O94927 KIAA0841 PROTEIN ;, mRNA sequence.    48  0.11  1
AC136132|AC136132.3 Rattus norvegicus clone CH230-134A24, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  0.45  1
AR271569|AR271569.1 Sequence 1 from patent US 6503729.            46  0.45  1
AC122571|AC122571.6 Rattus norvegicus clone CH230-125E3, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.45  1
AC121626|AC121626.4 Rattus norvegicus clone CH230-92A9, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.45  1
U67477|U67477.1 Methanococcus jannaschii section 19 of 150 of the complete genome.    46  0.45  1
AC113418|AC113418.2 Homo sapiens chromosome 5 clone RP11-574H6, complete sequence.    36  0.74  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54T09) RecName: Full=Uncharacterized transmembrane protein DDB...   206   3e-55
AY921573_1(AY921573|pid:none) Apis mellifera D2-like dopamine re...    36   0.52
CP000937_193(CP000937|pid:none) Francisella philomiragia subsp. ...    32   7.6
CP001037_748(CP001037|pid:none) Nostoc punctiforme PCC 73102, co...    32   9.9

 psg: 0.79  gvh: 0.51  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	 12.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VSG688 is nuc

>VSG688F.Seq
GNTGGTACTGACGTTTCACAAGTAAAATTACTAGGTCCATCTGCACCAAATACTGATGGT
GGTCAATTGAAATTAACATTGCCATTTGATTCTTCAACTGTTTTAACTTCAACCAAATTT
GTCGGAGGTGGTTCACAAGCTGTTGCACCCAATTCACCAACAAGTTTTTATATTGGGCAA
ACTTTAATTGATATTACATCTGAAAAGTCAAATTATGCCAATGAACAATTTTACATAACC
GTTGCAACATTTACCGAAGGAGCACAACAACCAGTTAGTCGTTCCCAATTGCTTTATACC
GGTTCTTCAAATACTCCAAACTCTGGTGGTGGTACAAATCCAAATGGTTCAAGTGATGTT
CCTCCAACTGTCGGTCCAATCTCCTCATCAGATTCTACAAATTCCAATTCTAGCTCCACT
GATACAGCTTCATCATCACCATCATCATCACCATCTTCATCACCCTCACCAAATGATTCC
GAAGGAAAGTGATAATGATTCATTACAAACCGATTCTACTGTATTGATCCAG--------
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