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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG683
Library VS
(Link to library)
Clone ID VSG683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15744-1
Original site URL
Representative seq. ID VSG683F
(Link to Original site)
Representative DNA sequence 
>VSG683 (VSG683Q) /CSM/VS/VSG6-D/VSG683Q.Seq.d/
CACCAAGNGGAGGCGCAACTCAATGGAATTAGTGGTTATGATAATAGTAGTATTAGTGGT
GGTAGTGAGGATGAACATAATTATCCAATTAATCCAATTAATTATATTGATCAAGTTATA
AATAATAGTGGTAAATTTAATTCAAGTAGTATGAATAAAGGTATTGGTATCAATCATCAC
CATCACAATAATAATAATAACAACAATATTAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAACAATAACAATAAC
ANTAGTAGTAGNGGATCACCAAAATTAGATGATGAATCTGATGAGAAAAAAANTGAGTCT
TATCATTATATGTTTCAAAATNTACATCCNATGATTGATCGAGATCCAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
HQXEAQLNGISGYDNSSISGGSEDEHNYPINPINYIDQVINNSGKFNSSSMNKGIGINHH
HHNNNNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNXSSXGSPKLDDESDEKKXES
YHYMFQNXHPMIDRD---
Translated Amino Acid sequence (All Frames) 
Frame A:
HQXEAQLNGISGYDNSSISGGSEDEHNYPINPINYIDQVINNSGKFNSSSMNKGIGINHH
HHNNNNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNXSSXGSPKLDDESDEKKXES
YHYMFQNXHPMIDRD---


Frame B:
tkxrrnsmelvvmiivvlvvvvrmniiiqliqliilikl*iivvnliqvv*ikvlvsiit
itiiiittiliiiiiiiiiiiiiiiiiiiiiiititititxvvxdhqn*mmnlmrkkxsl
iiicfkxyix*liei---


Frame C:
pxggatqwn*wl****y*ww**g*t*lsn*sn*ly*ssyk**w*i*fk*ye*rywyqssp
sq****qqy************************q*q*q*x***xitkir**i**ekx*vl
slyvskxtsxd*srs---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG683 (VSG683Q) /CSM/VS/VSG6-D/VSG683Q.Seq.d/                        359   2e-98
VFH812 (VFH812Q) /CSM/VF/VFH8-A/VFH812Q.Seq.d/                         40   0.026
VFH394 (VFH394Q) /CSM/VF/VFH3-D/VFH394Q.Seq.d/                         40   0.026
SSM589 (SSM589Q) /CSM/SS/SSM5-D/SSM589Q.Seq.d/                         40   0.026
VSF538 (VSF538Q) /CSM/VS/VSF5-B/VSF538Q.Seq.d/                         38   0.10
VHI650 (VHI650Q) /CSM/VH/VHI6-C/VHI650Q.Seq.d/                         38   0.10
VHI166 (VHI166Q) /CSM/VH/VHI1-C/VHI166Q.Seq.d/                         38   0.10
VHB748 (VHB748Q) /CSM/VH/VHB7-B/VHB748Q.Seq.d/                         38   0.10
VHB663 (VHB663Q) /CSM/VH/VHB6-C/VHB663Q.Seq.d/                         38   0.10
SHL432 (SHL432Q) /CSM/SH/SHL4-B/SHL432Q.Seq.d/                         38   0.10
own update 2004. 8. 6
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF509533|AF509533.1 Aegilops tauschii putative NBS-LRR resistance protein gene, complete cds.    46  0.34  1
AL731837|AL731837.2 Sminthopsis DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.34  1
AC131563|AC131563.1 Lytechinus variegatus clone Lv235L15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    48  0.68  2
AG147740|AG147740.1 Pan troglodytes DNA, clone: RPCI-43-009L18.TJ.    38  1.0  2
CC737308|CC737308.1 A1110_Pima-2_C02 Pima Gossypium barbadense genomic, genomic survey sequence.    44  1.4  1
Y16168|Y16168.1 Allogromia laticollaris mRNA for beta-tubulin.    38  1.8  2
AL935116|AL935116.6 Mouse DNA sequence from clone RP23-59I2 on chromosome 2.    42  1.9  2
AC106911|AC106911.4 Rattus norvegicus clone CH230-31H20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50  2.3  3
AL592077|AL592077.8 Zebrafish DNA sequence from clone XX-1CSE.    42  2.8  2
AX345528|AX345528.1 Sequence 599 from Patent WO0200928.           40  3.5  3
dna update 2003. 8.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177464_1(AF177464|pid:none) Drosophila melanogaster Tob homolo...    32   8.4
BT010303_1(BT010303|pid:none) Drosophila melanogaster LD04013 fu...    32   8.4
protein update 2009. 3.23
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSG683 is nuc
5' end seq. ID VSG683F
5' end seq. 
>VSG683F.Seq
CACCAAGNGGAGGCGCAACTCAATGGAATTAGTGGTTATGATAATAGTAGTATTAGTGGT
GGTAGTGAGGATGAACATAATTATCCAATTAATCCAATTAATTATATTGATCAAGTTATA
AATAATAGTGGTAAATTTAATTCAAGTAGTATGAATAAAGGTATTGGTATCAATCATCAC
CATCACAATAATAATAATAACAACAATATTAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAACAATAACAATAAC
ANTAGTAGTAGNGGATCACCAAAATTAGATGATGAATCTGATGAGAAAAAAANTGAGTCT
TATCATTATATGTTTCAAAATNTACATCCNATGATTGATCGAGATCCA----------
Length of 5' end seq. 408
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -