>VSG678 (VSG678Q) /CSM/VS/VSG6-D/VSG678Q.Seq.d/
TAGAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGT
GTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATC
CCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCAC
TTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTAT
ATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAAT
GTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGT
GGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGT
AGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCA
TTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCAXXXXXXXXXX

*KVKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIH
FNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLC
GNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAV---

Frame A:
*KVKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIH
FNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLC
GNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAV---


Frame B:
rklkwqkknkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvkst
smygiplvkknsvv*emviifkvivpllclmshpvfhtkmfqigtli*pefvktsqsfyv
vtklmlkivksnhpklfsivdtiyhtmmfqpnqitisknhssg*hqnssvtrl---


Frame C:
es*ngrkrtn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*npl
qcmgyrwsrkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw
*qs*c*rs*sqtipncfps*iqfiil*cfsqiklqfrktirlvniktpr*qgc---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG678 (VSG678Q) /CSM/VS/VSG6-D/VSG678Q.Seq.d/                       1037   0.0
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/                       1037   0.0
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/                       1033   0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/                       1027   0.0
CHK534 (CHK534Q) /CSM/CH/CHK5-B/CHK534Q.Seq.d/                       1023   0.0
VSH423 (VSH423Q) /CSM/VS/VSH4-A/VSH423Q.Seq.d/                       1017   0.0
VSG423 (VSG423Q) /CSM/VS/VSG4-A/VSG423Q.Seq.d/                       1015   0.0
VSG244 (VSG244Q) /CSM/VS/VSG2-B/VSG244Q.Seq.d/                       1013   0.0
AHG822 (AHG822Q) /CSM/AH/AHG8-A/AHG822Q.Seq.d/                       1007   0.0
VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/                       1001   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds.  1037  0.0  1
AX489114|AX489114.1 Sequence 6414 from Patent WO02053728.        115  1e-55  4
AF190700|AF190700.1 Candida albicans small G-protein Gsp1p (GSP1) gene, complete cds.   115  2e-53  3
CA758831|AAF60289.1, mRNA sequence.    74  1e-51  5
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  7e-41  5
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  8e-41  5
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  8e-41  5
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  8e-41  5
BI815554|BI815554.1 PfESToaa29h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  8e-41  5
BQ452295|BQ452295.1 PfESToaa94h01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  8e-41  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   333   1e-90
JC1455(JC1455;S20712)GTP-binding protein Ran/TC4 - dog                267   1e-70
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam...   266   3e-70
AJ608268_1(AJ608268|pid:none) Chironomus tentans ran1 mRNA for G...   266   3e-70
(Q7ZZX9) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   265   5e-70
(P42558) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   264   9e-70
BC041293_1(BC041293|pid:none) Xenopus laevis RAN, member RAS onc...   264   9e-70
PDBN(1RRP)A MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...   264   9e-70
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   264   9e-70
(Q9YGC0) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   264   9e-70

 psg: 0.80  gvh: 0.35  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSG678 is cyt

>VSG678F.Seq
TAGAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGT
GTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATC
CCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCAC
TTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTAT
ATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAAT
GTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGT
GGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGT
AGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCA
TTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCA----------