VSG669
Library VS
(Link to library)
Clone ID VSG669
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02377-1
Original site URL
Representative seq. ID VSG669F
(Link to Original site)
Representative DNA sequence
>VSG669 (VSG669Q) /CSM/VS/VSG6-C/VSG669Q.Seq.d/
CCCGCGTCCGCACCAAACAAACAGTTCAACAAATTCCATTATTAACAGTAAAGGCAGGAC
CTAGAGATGGTGATAAGTGGATTGATAGATTAAAAGAAGAATATCAAGCATTAATAAAAT
ATGTTGAAATTAATAAAAAAGCAGATAATGATTGGTTTAATATCGAGTCAAATCCATTAG
GAACAAGATGGCAAGGAAAATGTTGGTATATTTATAATTTTAAAAAATATGAATTTGATC
TGGAATTTGATATGCCAGTAACATATCCAGAAACAGCACCAGAAATTGCAATTCCAGAAT
TAGATGGTAAAACAGAGAAAATGTATAGAGGTGGTAAAATTTGTTTAACTATTCATTTTA
AACCATTATGGTCAAGAAATGTACCACATTTTGGGATTGCACATGCATTAGCATTAGGTT
TAGCACCTTGGTTAGCAGCCCGAAGTACCACATTTAGTTGATAATGGTATAATTAAACAT
AAAGAAGATAAATAAAAAAACAAAAGAAACCAAACAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
RVRTKQTVQQIPLLTVKAGPRDGDKWIDRLKEEYQALIKYVEINKKADNDWFNIESNPLG
TRWQGKCWYIYNFKKYEFDLEFDMPVTYPETAPEIAIPELDGKTEKMYRGGKICLTIHFK
PLWSRNVPHFGIAHALALGLAPWLAARSTTFS**wyn*t*rr*ikkqkkpnkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
pasapnkqfnkfhy*q*rqdlemvisglid*kknikh**nmlklikkqimiglissqih*
eqdgkenvgifiilknmnliwnlicq*hiqkqhqklqfqn*mvkqrkcievvkfv*lfil
nhygqemyhilglhmh*h*v*hlg*qpevphlvdngiikhkedk*knkrnqtkk---


Frame B:
prphqtnsstnsiinskgrt*rw**vd**ikrrissinkic*n**ksr**lv*yrvksir
nkmarkmlvyl*f*ki*i*sgi*yasnisrnstrncnsrirw*nrenv*rw*nlfnysf*
timvkkcttfwdctcisirfstlvsspkyhi*limv*lnikkinkktketkqkk---


Frame C:
RVRTKQTVQQIPLLTVKAGPRDGDKWIDRLKEEYQALIKYVEINKKADNDWFNIESNPLG
TRWQGKCWYIYNFKKYEFDLEFDMPVTYPETAPEIAIPELDGKTEKMYRGGKICLTIHFK
PLWSRNVPHFGIAHALALGLAPWLAARSTTFS**wyn*t*rr*ikkqkkpnkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG669 (VSG669Q) /CSM/VS/VSG6-C/VSG669Q.Seq.d/ 977 0.0
SFJ192 (SFJ192Q) /CSM/SF/SFJ1-D/SFJ192Q.Seq.d/ 464 e-130
AFF814 (AFF814Q) /CSM/AF/AFF8-A/AFF814Q.Seq.d/ 383 e-105
SSF609 (SSF609Q) /CSM/SS/SSF6-A/SSF609Q.Seq.d/ 44 0.002
CHD621 (CHD621Q) /CSM/CH/CHD6-A/CHD621Q.Seq.d/ 42 0.009
VSD369 (VSD369Q) /CSM/VS/VSD3-C/VSD369Q.Seq.d/ 40 0.034
VFN471 (VFN471Q) /CSM/VF/VFN4-C/VFN471Q.Seq.d/ 40 0.034
VFL772 (VFL772Q) /CSM/VF/VFL7-C/VFL772Q.Seq.d/ 40 0.034
VFL513 (VFL513Q) /CSM/VF/VFL5-A/VFL513Q.Seq.d/ 40 0.034
VFK529 (VFK529Q) /CSM/VF/VFK5-B/VFK529Q.Seq.d/ 40 0.034

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BP187658|BP187658.1 Dugesia japonica cDNA, clone: 00225_HH, expressed in the head. 82 3e-15 2
AW562273|AW562273.1 SWOvAFCAP37D04SK Onchocerca volvulus adult female cDNA (SAW98MLW-OvAF) Onchocerca volvulus cDNA clone SWOvAFCAP37D04 5', mRNA sequence. 56 7e-13 4
BU793853|BU793853.1 SJF2BUC04 SJF Schistosoma japonicum cDNA, mRNA sequence. 56 9e-13 3
BU796671|BU796671.1 SJF2EEG11 SJF Schistosoma japonicum cDNA, mRNA sequence. 56 2e-12 3
BM356350|BM356350.1 kx63c09.y1 Parastrongyloides trichosuri FL SL1 TOPO v1 Murphy Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:YLF6_CAEEL Q03598 HYPOTHETICAL 18.5 KDA PROTEIN C40H1.6 IN CHROMOSOME III. [2] SW:YLF6_CAEEL ;, mRNA sequence. 68 2e-12 2
BU723907|BU723907.1 SJMBBE04 SJM Schistosoma japonicum cDNA, mRNA sequence. 50 5e-11 3
BM881926|BM881926.1 rb15f07.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to SW:YCC6_HUMAN Q9Y3C8 HYPOTHETICAL PROTEIN CGI-126. ;, mRNA sequence. 60 7e-09 2
BQ260598|BQ260598.1 fz62h01.y1 zebrafish fin day1 regeneration Danio rerio cDNA clone 5907697 5' similar to SW:YCC6_HUMAN Q9Y3C8 HYPOTHETICAL PROTEIN CGI-126. ;, mRNA sequence. 72 8e-09 1
BG736410|BG736410.1 rk56e12.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to SW:YLF6_CAEEL Q03598 HYPOTHETICAL 18.5 KDA PROTEIN C40H1.6 IN CHROMOSOME III. [2] SW:YLF6_CAEEL ;, mRNA sequence. 68 1e-07 1
BM025947|BM025947.1 fu75g04.x1 Gong zebrafish testis Danio rerio cDNA clone 5376943 3' similar to SW:YCC6_HUMAN Q9Y3C8 HYPOTHETICAL PROTEIN CGI-126. ;, mRNA sequence. 64 2e-06 1
dna update 2003. 8.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXC9) RecName: Full=Probable Ufm1-conjugating enzyme 1; AltNa... 280 2e-79
AY815139_1(AY815139|pid:none) Schistosoma japonicum SJCHGC04422 ... 219 1e-57
(Q6BBI8) RecName: Full=Ufm1-conjugating enzyme 1; AltName: Full=... 213 2e-55
AC005916_3(AC005916|pid:none) Arabidopsis thaliana chromosome 1 ... 209 3e-55
BT001180_1(BT001180|pid:none) Arabidopsis thaliana Similar to CG... 209 3e-55
(Q9CR09) RecName: Full=Ufm1-conjugating enzyme 1; AltName: Full=... 212 4e-55
AB154405_1(AB154405|pid:none) Homo sapiens Ufc1 mRNA for Ufm1-co... 212 7e-55
BC075191_1(BC075191|pid:none) Xenopus laevis hypothetical protei... 213 1e-54
AK292776_1(AK292776|pid:none) Homo sapiens cDNA FLJ75826 complet... 212 3e-54
BC135515_1(BC135515|pid:none) Xenopus tropicalis hypothetical pr... 212 3e-54
protein update 2009. 3.23
PSORT

psg: 0.80 gvh: 0.31 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
28.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for VSG669 is mit

5' end seq. ID VSG669F
5' end seq.
>VSG669F.Seq
CCCGCGTCCGCACCAAACAAACAGTTCAACAAATTCCATTATTAACAGTAAAGGCAGGAC
CTAGAGATGGTGATAAGTGGATTGATAGATTAAAAGAAGAATATCAAGCATTAATAAAAT
ATGTTGAAATTAATAAAAAAGCAGATAATGATTGGTTTAATATCGAGTCAAATCCATTAG
GAACAAGATGGCAAGGAAAATGTTGGTATATTTATAATTTTAAAAAATATGAATTTGATC
TGGAATTTGATATGCCAGTAACATATCCAGAAACAGCACCAGAAATTGCAATTCCAGAAT
TAGATGGTAAAACAGAGAAAATGTATAGAGGTGGTAAAATTTGTTTAACTATTCATTTTA
AACCATTATGGTCAAGAAATGTACCACATTTTGGGATTGCACATGCATTAGCATTAGGTT
TAGCACCTTGGTTAGCAGCCCGAAGTACCACATTTAGTTGATAATGGTATAATTAAACAT
AAAGAAGATAAATAAAAAAACAAAAGAAACCAAACAAAAAAAAAA----------
Length of 5' end seq. 525
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -